BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0024.p (260 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1073 [P] COG1135 ABC-type metal ion transport system, ATPase ... 261 6e-70 HI0621.1 [E] COG0241 Histidinol phosphatase and related phosphat... 260 1e-69 STM0247 [P] COG1135 ABC-type metal ion transport system, ATPase ... 260 2e-69 YPO1318 [P] COG1135 ABC-type metal ion transport system, ATPase ... 259 2e-69 lin2514 [P] COG1135 ABC-type metal ion transport system, ATPase ... 259 4e-69 >YPO1073 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 343 Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 169/242 (69%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI + H+ K + ++AL D++L + G+I+G+IGASGAGKSTLIRC N LE+P SG Sbjct: 1 MIKLTHISKVFQQGSRTITALSDVSLHVPAGQIYGVIGASGAGKSTLIRCANMLERPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 + + +T IGMIFQ FNLL ++TVYGN+A PL + S+ K+R Sbjct: 61 QVLVDDQDLTTLSEGQLTRARRQIGMIFQHFNLLSSRTVYGNIALPLELDNTSRADIKKR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E+L+LVGL+ K + YP+ LSGGQKQRV IARALA+ P VLL DEATSALDP TT SIL Sbjct: 121 VNELLDLVGLTDKQDAYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL+DINR+L LTI+LITHEMDV++ IC AVI G+++E V ++F P++ A+QF Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDQVAVISEGKLIEKDSVSEVFSHPKTPLAQQF 240 Query: 241 VN 242 + Sbjct: 241 IQ 242 >HI0621.1 [E] COG0241 Histidinol phosphatase and related phosphatases Length = 346 Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 21/241 (8%), Positives = 53/241 (21%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 M + H S + + + A G + + P Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 + + + I + + K + + A + + +R Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 + + + A A++ + E A + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 E + R L+L + +++ + E E + S Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240 Query: 241 V 241 + Sbjct: 241 L 241 >STM0247 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 343 Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/241 (52%), Positives = 169/241 (70%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI + ++ K + + AL +++L + G+I+G+IGASGAGKSTLIRC+N LE+P G Sbjct: 1 MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 S+++GG +T IGMIFQ FNLL ++TV+GNVA PL + K+ K R Sbjct: 61 SVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKEEIKRR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E+L+LVGL K + YP+ LSGGQKQRV IARALA+ P VLL DEATSALDP TT SIL Sbjct: 121 VTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL+DINR+L LTI+LITHEMDV++ IC AVI G ++E V ++F P++ A++F Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 240 Query: 241 V 241 + Sbjct: 241 I 241 >YPO1318 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 328 Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 132/241 (54%), Positives = 170/241 (70%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI+++ L K+Y + ALE+++L+I G +FGI+G SGAGKSTLIRCLN LE+P SG Sbjct: 1 MISIERLSKTYPQGGLPMVALEEVSLEIPTGSVFGIVGRSGAGKSTLIRCLNLLERPTSG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 I++ G +T IGMIFQ F+LL ++ V+ N+A L + G K ++R Sbjct: 61 RIQVDGRELTTLSDRELRLQRQNIGMIFQNFHLLHSRNVWDNIAVGLEIIGMPKAQRQQR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E+L+LVGLS KA +PSQLSGGQKQRVGIARALAA+P LLSDEATSALDP+TT SIL Sbjct: 121 VAELLDLVGLSDKAYAFPSQLSGGQKQRVGIARALAAKPSYLLSDEATSALDPETTASIL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 LL DINR+L LTIVLITHE+DV++ IC NAA++E GR+VE G + L P S + Sbjct: 181 ALLSDINRQLGLTIVLITHELDVVKSICDNAALLETGRVVETGAIADLLSDPLSRLGRSL 240 Query: 241 V 241 + Sbjct: 241 L 241 >lin2514 [P] COG1135 ABC-type metal ion transport system, ATPase component Length = 340 Score = 259 bits (661), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 128/241 (53%), Positives = 170/241 (70%) Query: 1 MIAVKHLHKSYATRLGRVSALEDINLQIAKGEIFGIIGASGAGKSTLIRCLNRLEQPDSG 60 MI ++++ K Y +R +V A++ ++L+I +GEIFG++G SGAGKSTLIR N LE P G Sbjct: 1 MITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGKSTLIRMFNGLELPTEG 60 Query: 61 SIEIGGVPITXXXXXXXXXXXXXIGMIFQQFNLLDAKTVYGNVAFPLRVAGCSKQYEKER 120 S+E+ + I+ IGMIFQ FNLL ++TV N+AFPL +AG + + R Sbjct: 61 SVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAENIAFPLEIAGVRGEKRRFR 120 Query: 121 VVEILELVGLSGKANVYPSQLSGGQKQRVGIARALAAEPDVLLSDEATSALDPQTTYSIL 180 V E++ LVGL GK N YP++LSGGQKQRVGIARALA P VLL DEATSALDPQTT +L Sbjct: 121 VNELIRLVGLEGKENAYPAELSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDEVL 180 Query: 181 ELLEDINRKLNLTIVLITHEMDVLRHICRNAAVIEGGRIVENGPVEQLFYRPESETAKQF 240 ELL DIN++LNLTI++ITHEM V+R IC AV+E G++ E G V +F P+ + ++F Sbjct: 181 ELLLDINKRLNLTIIVITHEMHVIRKICNRVAVMENGKVAELGDVLDVFRHPKEKVTQRF 240 Query: 241 V 241 V Sbjct: 241 V 241 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,574,425 Number of extensions: 644347 Number of successful extensions: 9495 Number of sequences better than 1.0e-05: 2131 Number of HSP's gapped: 6863 Number of HSP's successfully gapped: 2303 Length of query: 260 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 156 Effective length of database: 26,383,695 Effective search space: 4115856420 Effective search space used: 4115856420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)