BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0015.p (365 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01827 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate tran... 246 3e-65 AGc4336 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 229 6e-60 mll1621 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 217 3e-56 TM0484 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 89 9e-18 AGc1930 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 87 6e-17 >SMc01827 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 330 Score = 246 bits (629), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/310 (45%), Positives = 190/310 (61%), Gaps = 12/310 (3%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V LQLKWV QAQFAGY++A+DKG+Y EEGL VEI PGGPDI P Q +AGG AD+ VDW+ Sbjct: 27 VTLQLKWVTQAQFAGYYVAKDKGFYEEEGLDVEIKPGGPDIAPAQVIAGGGADVIVDWMP 86 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 S L ++E+ +PLV IAQ F+ SG++L K++G+ GP KGK +G W GNE+ L+ Sbjct: 87 SALATREKGVPLVNIAQPFKTSGMMLTCLKESGVKGPEDFKGKTLGVWFFGNEYPFLSWM 146 Query: 182 DKYKL--DSNKD-LNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDM 238 K+ D D + KQGF +D + + S MTYNEY ++++G+K EDL Sbjct: 147 SHLKIPTDGGPDGVTVLKQGFNVDPLIQKQAACISTMTYNEYWQVIDAGIKPEDLVTFKY 206 Query: 239 NDEGVAMLEDNLFANKEWL--EANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEG 296 D+GVA LED L+ ++ L EA K+ KFVRAS+KGWK A +P+ A D V++ G Sbjct: 207 EDQGVATLEDGLYVLEDKLKDEAFKDKMVKFVRASMKGWKFAEENPDEAADIVLENDSTG 266 Query: 297 STTREHQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDE-AY 355 + T +HQ MM EVAKL A G D A +++T L G SK E A+ Sbjct: 267 AQTEKHQKRMMGEVAKLT------AGSSGALDEADYKRTVQSLLAGGSDPVISKEPEGAW 320 Query: 356 TNEIVEMAAK 365 T++I + A K Sbjct: 321 THDITDAALK 330 >AGc4336 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 204 Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 0/310 (0%), Positives = 0/310 (0%), Gaps = 12/310 (3%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 + + + P G +I Sbjct: 27 EIKGSPSMVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGVIREINTSVNT 86 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 +++ +QE+ + + + Sbjct: 87 TIVAMTDQEIYGKDEVWEYPTTAGDCEDFVLLKRKKLIERGFSVADLLITVVRKPDGEGH 146 Query: 182 DKYKLDSN---KDLNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDM 238 L + Sbjct: 147 AVLTLRTTDGD 206 Query: 239 NDEGVAMLEDNLFANKEWLEANK--ETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEG 296 Sbjct: 207 266 Query: 297 STTREHQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDE-AY 355 Sbjct: 267 ------ 320 Query: 356 TNEIVEMAAK 365 Sbjct: 321 330 >mll1621 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 323 Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/309 (42%), Positives = 180/309 (58%), Gaps = 16/309 (5%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V LQLKWV QAQFAGY++A+ KG+Y EGL V+I PGGPDI PEQ +AGG AD+ VDW+ Sbjct: 26 VTLQLKWVTQAQFAGYYVAKAKGFYEAEGLDVDIKPGGPDIAPEQVIAGGGADVIVDWMG 85 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFEILALF 181 L ++E+ +PLV IAQ F+K+G+ LV KD I A KG +G W GNE+ A Sbjct: 86 GALAAREKGVPLVNIAQPFKKAGMELVCPKDGPIKTEADFKGHTLGVWFFGNEYPFYAWM 145 Query: 182 DK--YKLDSNKD-LNFTKQGFTMDQFLGGEIDAASAMTYNEYQVILESGVKAEDLNVIDM 238 +K K D KD + KQ F + + + D S MTYNEY ++++G K E L V + Sbjct: 146 NKLGLKTDGGKDGVTVLKQSFDVQPLIQKQADCISVMTYNEYWQLIDAGYKPEQLTVFNY 205 Query: 239 NDEGVAMLEDNLFANKEWLE--ANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEEG 296 + G +LED L+A+++ L+ A + +FVRAS+KGWK A+ + + A VM + G Sbjct: 206 SAMGNDLLEDGLYASEDKLKDPAFADKMVRFVRASMKGWKYAVDNNDEAAGIVM---DGG 262 Query: 297 STTREHQLTMMTEVAKLIQPEGFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDEAYT 356 HQ MM+EVAKLI + G D A +++TA L +I K AYT Sbjct: 263 GQDENHQKRMMSEVAKLID------NADGKLDPATYERTAKALLDQKIITKEPKG--AYT 314 Query: 357 NEIVEMAAK 365 I + A K Sbjct: 315 TAITDKAIK 323 >TM0484 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 316 Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 141/306 (46%), Gaps = 19/306 (6%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 V + L W P G ++A+D G+Y EEGL V+I+ + EQ VA G A+ GV + Sbjct: 22 VTVVLDWYPNTNHTGLYVAKDLGFYREEGLDVKIVQPS-RLTAEQLVASGKAEFGVSYQE 80 Query: 122 SLLTSQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAGPAGLKGKKVGNWMGGNEFE---IL 178 ++ S+ + MP+V IA I Q + KD GI +GK+ G+W G+ E I Sbjct: 81 AVTLSRGEGMPIVSIAAIIQHNTSGFAWLKDEGIKSVKDWEGKRYGSW--GSPIEKATIE 138 Query: 179 ALFDKYKLDSNKDLNFTKQGFTMDQFLGGEIDAAS-AMTYNEYQVILE--SGVKAEDLNV 235 + KY D +K + F G MD F G D A + + + G++ E L + Sbjct: 139 YIMRKYGADPSKVI-FVNVG-QMDFFAGTLNDVFDFAWIFYGWDGVASKVKGIEIEFLPL 196 Query: 236 IDMNDEGVAMLEDNLFANKEWLEANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEE 295 D+ DE L ++ ++ + +F+RA+ KG++ AI P A ++K A E Sbjct: 197 KDI-DEVFDYYTPVLITSESLMKQKPDLVRRFLRATAKGYEYAIQHPVEAAKILLKYAPE 255 Query: 296 GSTTREHQLTMMTEVAKLIQPE-GFDASRLGYTDAAAFQQTADIALKFGVIKTASKTDEA 354 ++ E K + + DA + GY +++ A+ G +K +A Sbjct: 256 LDE------KIVVESQKYLAGQYKADAEKWGYQKEEVWRRYAEWLHSMGFLKEMIDVTKA 309 Query: 355 YTNEIV 360 +TNE + Sbjct: 310 FTNEFL 315 >AGc1930 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 816 Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 21/308 (6%), Positives = 58/308 (18%), Gaps = 20/308 (6%) Query: 62 VKLQLKWVPQAQFAGYFLAQDKGYYAEEGLKVEILPGGPDIVPEQQVAGGSADIGVDWVA 121 + + +G + + + + D G Sbjct: 36 KRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNADGSVTVTDNGRGIPT 95 Query: 122 SLLT--SQEQEMPLVQIAQIFQKSGLVLVSKKDAGIAG-PAGLKGKKVGNWMGGNEFEIL 178 + + ++ K + + V + L Sbjct: 96 DIHSSEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKL 155 Query: 179 ALFDKYK-LDSNKDLNFTKQGFTMDQFL--GGEIDAASAMTYNEYQVILESGVKAEDLNV 235 + L+ + MT +Y + + LN Sbjct: 156 HEIGFTHGVADAP-LSVIGEYEGRSGTEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNS 214 Query: 236 IDMNDEGVAMLEDNLFANKEWLEANKETAAKFVRASLKGWKDAIADPEAAVDSVMKLAEE 295 D + + RA IA +++A Sbjct: 215 GVRILLTDKRHSDVKQQELLYDGGLEAFVRYLDRAKKPLVDKPIAIHSEKDGITVEVALW 274 Query: 296 GSTTREHQLTMMTEVAKLIQPE-------GFDASRLGYTDAAAFQQTADIALKF-GVIKT 347 + + + T ++ ++ T+ I + ++ Sbjct: 275 WNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQV-----TSYADTSGIMKREKVSLQG 329 Query: 348 ASKTDEAY 355 + Sbjct: 330 EDCREGLT 337 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,565,428 Number of extensions: 940761 Number of successful extensions: 2189 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 2172 Number of HSP's successfully gapped: 20 Length of query: 365 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 257 Effective length of database: 25,922,359 Effective search space: 6662046263 Effective search space used: 6662046263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)