BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0014.p
         (123 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01826 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate tran...    86   1e-17
mll1623 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans...    84   6e-17
AGc4335 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans...    83   9e-17
TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp...    61   5e-10
BS_ytlD [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans...    60   7e-10

>SMc01826 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 289

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 4   MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63
           M +N   G+ A   +  DLM +YAA        LR+  + P++F ALKIN+T ++IGAIV
Sbjct: 166 MLVNTVSGLAAASHMERDLMRTYAASWWQTLVKLRLPAAWPFIFNALKINSTLALIGAIV 225

Query: 64  GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122
            EFF +   G+G+ +S  +    + + W+ I +AA+AG +FY MV  +E+    WH S R
Sbjct: 226 AEFFGTPIVGMGFRISTEVGRMNVDMVWAEIAVAAVAGSVFYGMVALIERAVTFWHPSIR 285

Query: 123 A 123
           +
Sbjct: 286 S 286


>mll1623 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 259

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 4   MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63
           M +N   G+ A   +  DLM +YA+G       LR+  + P++F ALKIN+T ++IGAIV
Sbjct: 138 MLVNTVAGLAASGHMERDLMRTYASGYWPTLIKLRLPAAAPFIFNALKINSTLALIGAIV 197

Query: 64  GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122
            EFF +   G+G+ +S  +    + + W+ I +AA+AG +FY +V  +E+    WH S R
Sbjct: 198 AEFFGTPVVGMGFRISTEVGRMNIDMVWAEIAVAALAGSVFYGVVALVERAVTFWHPSVR 257

Query: 123 A 123
            
Sbjct: 258 G 258


>AGc4335 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 204

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 0/121 (0%), Positives = 0/121 (0%), Gaps = 1/121 (0%)

Query: 4   MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63
                                                                       
Sbjct: 167                                                              226

Query: 64  GEFFFSS-RGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSRR 122
                                                                       
Sbjct: 227                                                              286

Query: 123 A 123
            
Sbjct: 287   287


>TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 250

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query: 4   MAINAYKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIV 63
           +A+N  +G   +D  ALDL     A K  ++RYL + ++LPYV + LKI+ T +++ A++
Sbjct: 129 VALNTLEGFRTIDQDALDLFKVMKATKIQIYRYLVLPHTLPYVLSGLKISATYAVVSAVI 188

Query: 64  GEFFFSSRGLG 74
           GE+  + +GLG
Sbjct: 189 GEWLGAEKGLG 199


>BS_ytlD [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 270

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 9   YKGMTAVDPLALDLMHSYAAGKPAVFRYLRIQNSLPYVFTALKINTTASMIGAIVGEFFF 68
           Y     VD     +M ++ A K  +F+ + +  S P + + LK+N   S +G IVGEF  
Sbjct: 160 YTAFQEVDENYTKVMKTFGAKKWVIFKEVILPASSPAIISTLKVNVGLSWVGVIVGEFLV 219

Query: 69  SSRGLGYLLSNSIKVAKMPLGWSCIVLAAIAGVIFYLMVERLEKVFIKWHSSR 121
           S  GLGY++    +V    L +  +++ AI   + Y  VE LEK   KW   R
Sbjct: 220 SKVGLGYMIIYGFQVFNFTLVFLSLLIIAIFATLMYQGVELLEK---KWTKGR 269


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.328    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,907,130
Number of extensions: 273837
Number of successful extensions: 917
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 33
Length of query: 123
Length of database: 38,378,431
Length adjustment: 89
Effective length of query: 34
Effective length of database: 28,113,705
Effective search space: 955865970
Effective search space used: 955865970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)