BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0013.p
         (181 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp...    56   3e-08
mll1623 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans...    50   2e-06
AGl128GM [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate tran...    50   2e-06

>TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 250

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)

Query: 80  KYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRWGGGS 139
           +Y LP PS+I       + +L+ ++ YT+ EA  G++IG   G  +A+    +       
Sbjct: 28  QYLLPKPSSIVLEGLSQWKILMDHSLYTILEAFSGLVIGLVLGVGLAVLMDLFQTVKEVM 87

Query: 140 LTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIVAGGT 177
             ++    A+PIVA+AP++ +WFG G+G++  IVA  T
Sbjct: 88  YPILIISQAIPIVAVAPLVIIWFGLGVGTKIGIVAFVT 125


>mll1623 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 259

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 83  LPLPSAIAEAMRDNFSLLLSYTGYTLAEAVV-GMLIGSACGFLIALAATAWPRWGGGSLT 141
           LP PSAI   +  +  +L +    T+ +AV+ G ++GS  GF+ A+ A   P    G L 
Sbjct: 39  LPPPSAIGARIAGSLPVLGADVRQTIFKAVIFGYVVGSGAGFITAILADRVPFLRRGLLP 98

Query: 142 LVAALNAVPIVALAPIMNLWFGDGIGSRAAIV 173
           +   ++A+PI+ +APIM +WFG    S+AA+V
Sbjct: 99  IGNMVSALPIIGVAPIMVMWFGFDWQSKAAVV 130


>AGl128GM [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component
          Length = 134

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 6/98 (6%), Positives = 15/98 (15%)

Query: 76  LELKKYQLPLPSAIAEAMRDNFSLLLSYTGYTLAEAVVGMLIGSACGFLIALAATAWPRW 135
           +                       L           +      S+       + +   + 
Sbjct: 33  MVTAVSYKSFQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETSGSGRIQT 92

Query: 136 GGGSLTLVAALNAVPIVALAPIMNLWFGDGIGSRAAIV 173
                    A   +  V       +   D I      +
Sbjct: 93  LRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKGICDI 130


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,912,169
Number of extensions: 473044
Number of successful extensions: 1060
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1069
Number of HSP's successfully gapped: 7
Length of query: 181
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 81
Effective length of database: 26,845,031
Effective search space: 2174447511
Effective search space used: 2174447511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)