BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0012.p (269 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4334 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 106 3e-23 SMc01825 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate tran... 97 3e-20 mll1624 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 94 2e-19 TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 92 6e-19 BH2681 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 92 1e-18 >AGc4334 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 204 Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 0/276 (0%), Positives = 0/276 (0%), Gaps = 37/276 (13%) Query: 2 KNRTFMRERVLPLFVWIFGLLAVWEAVSWWL---------LHIAKTP---------LAQS 43 + V + +A + + H + Sbjct: 5 PLARALLFAVAAGLMTAASAMAEIKGSPSMVTGGITSQPIGHYEFCQKYADECNIRSKVT 64 Query: 44 K--LPYVHEVAAALWKYS--------STLLKEXXXXXXXXXXXXXXXXXXXXXXXXXMSL 93 + + T + + Sbjct: 65 PPPRVTDYGWGVIREINTSVNTTIVAMTDQEIYGKDEVWEYPTTAGDCEDFVLLKRKKLI 124 Query: 94 SKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQAS----RIIISGYITFFPVALNMLR 149 + V + + D + + + + Sbjct: 125 ERGFSVADLLITVVRKPDGEGHAVLTLRTTDGDYILDNLTDDVKLWTDTNYTYLKRQASF 184 Query: 150 GLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAAPLAVTGAILVEL-MGA 208 Sbjct: 185 244 Query: 209 RHGIGVIMLRNLYYGPSHTYMFWSTVLVGALLGIAS 244 Sbjct: 245 ---- 276 >SMc01825 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 294 Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 35/264 (13%) Query: 1 MKNRTFMRERVLPLFVWIFGLLAVWEAVSWWL------------------LHIAKTPLAQ 42 M+ + +++++LP+ + L+A W S +L I + +AQ Sbjct: 1 MREESLLKDKLLPVSTVVLLLIAGWYVASVFLNAPFERDTAARAGTEIGFSEILRNTMAQ 60 Query: 43 SK--LPYVHEVAAALWKYSS--------TLLKEXXXXXXXXXXXXXXXXXXXXXXXXXMS 92 + LP H++ A +W ++ +L+ + Sbjct: 61 ERPVLPAPHQLIAEIWDTTANKAITSKRSLVYHAWITLSATLLGFGIGTVLGVLLAVGIV 120 Query: 93 LSKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQAS----RIIISGYITFFPVALNML 148 ++ +++ P+ +ASQ IPIL +AP+I ++ S + +IS Y++FFPV + M+ Sbjct: 121 HNRAMDRSLMPWVIASQTIPILAIAPMIIVVLNAIGISGLLPKALISTYLSFFPVVVGMV 180 Query: 149 RGLRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAAPLAVTGAILVEL-MG 207 +GLRS + ++LM + A P +WKLR+P+++P LF+ LK+A +++ GAI+ EL G Sbjct: 181 KGLRSPETIQLDLMHTYNASPAQTFWKLRWPSSMPYLFTSLKVAVAISLVGAIVGELPTG 240 Query: 208 ARHGIGVIMLRNLYYGPSHTYMFW 231 A G+G +L YYG T W Sbjct: 241 AVAGLGARLLAGSYYG--QTVQIW 262 >mll1624 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 292 Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 7/150 (4%) Query: 96 TVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQASRII----ISGYITFFPVALNMLRGL 151 T+++ P+ +ASQ IPIL +AP+I ++ + +I IS Y++FFPV + M++GL Sbjct: 121 TLDRSLMPWIIASQTIPILAVAPMIIVVLAAIGVTGLIPKAMISTYLSFFPVTVGMVKGL 180 Query: 152 RSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAAPLAVTGAILVEL-MGARH 210 RS ++ ++LM + A +WKLR PA++P LF+ +K+A ++ GAI+ EL GA Sbjct: 181 RSPEIMHLDLMHTYNASASQTFWKLRVPASVPFLFTSMKVAVAASLVGAIVGELPTGAVA 240 Query: 211 GIGVIMLRNLYYGPSHTYMFWSTVLVGALL 240 GIG +L YY S + WS ++ G+++ Sbjct: 241 GIGAKLLAGAYY--SQSIDIWSALVAGSIV 268 >TM0485 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 250 Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 79/130 (60%) Query: 91 MSLSKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQASRIIISGYITFFPVALNMLRG 150 M L +TV+++ +P + SQ IPI+ +AP++ ++I I ++T FPVALN L G Sbjct: 77 MDLFQTVKEVMYPILIISQAIPIVAVAPLVIIWFGLGVGTKIGIVAFVTLFPVALNTLEG 136 Query: 151 LRSVDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAAPLAVTGAILVELMGARH 210 R++D A++L + + A +Y L P LP + SGLKI+A AV A++ E +GA Sbjct: 137 FRTIDQDALDLFKVMKATKIQIYRYLVLPHTLPYVLSGLKISATYAVVSAVIGEWLGAEK 196 Query: 211 GIGVIMLRNL 220 G+G+ M+R + Sbjct: 197 GLGIYMIRAM 206 >BH2681 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Length = 250 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 94 SKTVEQLAFPYAVASQMIPILGLAPIIYGIVRDEQASRIIISGYITFFPVALNMLRGLRS 153 ++ VE+ +P VASQ IP++ LAPI S++ ++ +TFFP+ +N GL+S Sbjct: 84 NERVERAVYPLLVASQTIPVIALAPIFVLWFGYSIWSKVAVTVLLTFFPITVNTYDGLKS 143 Query: 154 VDLPAVELMRSLAAKPWALYWKLRFPAALPGLFSGLKIAAPLAVTGAILVELMGARHGIG 213 + EL ++ A L+++L P+ LP +GL+IA PLAV GA + E +GA G+G Sbjct: 144 TNRQYEELFYTMGATKRQLFYRLFVPSTLPSFLTGLRIAVPLAVIGAAVGEWLGANEGLG 203 Query: 214 VIMLRNL--YYGPSHTYMFWSTVLVGALLGIASYWLMSLVERLAAPWQPE 261 R + + GP ++ + + +LLGI + + +E + PW+ + Sbjct: 204 YFSRRMMTQFDGPG----VFAPIFILSLLGILGFAAIKKLENILLPWRKK 249 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,029,162 Number of extensions: 671224 Number of successful extensions: 2272 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 2252 Number of HSP's successfully gapped: 59 Length of query: 269 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 164 Effective length of database: 26,268,361 Effective search space: 4308011204 Effective search space used: 4308011204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)