BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0011.p
         (101 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1625 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...   118   3e-27
SMc01823 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tran...   113   6e-26
AGc4331 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...   112   9e-26
SMc02346 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tran...   107   5e-24
BMEII0108 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra...   100   7e-22

>mll1625 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 263

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 72/97 (74%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + ++LLMDEPF ALDE  R+ LNE+LL +W++   TI FVTHSIPE+++LS R+ V+SP 
Sbjct: 159 DADLLLMDEPFGALDEIVRDHLNEQLLQLWARTNKTICFVTHSIPEAVYLSTRIVVMSPR 218

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR+S I++  LP+ R  ++R +PEF  + AR+RD  
Sbjct: 219 PGRVSDIIESTLPKERPLDIRETPEFLAIAARVRDGL 255


>SMc01823 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 304

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 71/97 (73%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           + ++LLMDEPF ALDE  R+ LNE+LL +W++   TI FVTHSIPE+++LS ++ V+SP 
Sbjct: 200 DADLLLMDEPFGALDEIVRDHLNEQLLKLWARTDKTICFVTHSIPEAVYLSTKIIVMSPR 259

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           PGR++ +++  LPR R   +R +PEF E+  R+R+  
Sbjct: 260 PGRVTDVIESTLPRARPLGIRETPEFLEIAHRVREGL 296


>AGc4331 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 204

 Score =  112 bits (281), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 0/98 (0%), Positives = 0/98 (0%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
                                                                       
Sbjct: 160                                                              219

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSFE 99
                                                 
Sbjct: 220                                        257


>SMc02346 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 278

 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 70/97 (72%)

Query: 2   EPEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPH 61
           +P++LLMDEPF+ALD  TR+ L  ELL +W ++++T+VFVTHSI E+I+L+DRV V++  
Sbjct: 163 DPQVLLMDEPFAALDAQTRDILQSELLRIWEQIKTTVVFVTHSIDEAIYLADRVVVMTAR 222

Query: 62  PGRLSAIVDIPLPRPRTAEMRNSPEFFELVARIRDSF 98
           P R+  IV+I LPRPR  ++RN   F     R+ +S 
Sbjct: 223 PARVKEIVEIDLPRPRDLDIRNGEAFNAYRGRVWESL 259


>BMEII0108 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component
          Length = 242

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 65/92 (70%)

Query: 3   PEILLMDEPFSALDEFTRERLNEELLAVWSKVQSTIVFVTHSIPESIFLSDRVFVLSPHP 62
           PEILLMDEPF ALD  TR  + ++LL  WS+ + T++F+TH + E+++L++RV V++  P
Sbjct: 132 PEILLMDEPFGALDALTRVHMQDQLLDAWSRERRTVMFITHDVDEAVYLANRVIVMAARP 191

Query: 63  GRLSAIVDIPLPRPRTAEMRNSPEFFELVARI 94
           GRL  I+ + LP PRT  +R SPEF  +  R+
Sbjct: 192 GRLDQIIPVDLPYPRTEAIRLSPEFAAIRNRV 223


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,494,453
Number of extensions: 328185
Number of successful extensions: 2640
Number of sequences better than 1.0e-05: 236
Number of HSP's gapped: 2800
Number of HSP's successfully gapped: 236
Length of query: 101
Length of database: 38,378,431
Length adjustment: 70
Effective length of query: 31
Effective length of database: 30,305,051
Effective search space: 939456581
Effective search space used: 939456581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)