BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0010.p (154 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1625 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 155 3e-38 AGc4331 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 150 7e-37 SMc01823 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tran... 149 1e-36 AGc1932 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 117 5e-27 mll8572 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 115 3e-26 >mll1625 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 263 Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 72/134 (53%), Positives = 93/134 (69%) Query: 1 MRYQTDTADVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKS 60 + +QT+ V AL V L I KGEFVS +GPSGCGKTTLLR++ADL PT G ++V G + Sbjct: 16 LTFQTNDGPVQALSNVDLTIGKGEFVSFIGPSGCGKTTLLRVIADLEKPTSGTISVNGMT 75 Query: 61 AREARLAQKYGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFA 120 +AR + YG VFQ+ L+ WR + N+ LPLE+MG+ K+ + ++ LDLV L GF Sbjct: 76 PEQAREKRAYGYVFQAAALFPWRTIERNVGLPLEIMGLSKAEQAERIKRTLDLVNLSGFE 135 Query: 121 DKYPWQLSGGMQQR 134 KYPWQLSGGMQQR Sbjct: 136 KKYPWQLSGGMQQR 149 >AGc4331 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 204 Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 14/134 (10%), Positives = 25/134 (18%) Query: 1 MRYQTDTADVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKS 60 +A S+ + C K + +TP Sbjct: 17 GLMTAASAMAEIKGSPSMVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGV 76 Query: 61 AREARLAQKYGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFA 120 RE + IV + + ++ K +E V Sbjct: 77 IREINTSVNTTIVAMTDQEIYGKDEVWEYPTTAGDCEDFVLLKRKKLIERGFSVADLLIT 136 Query: 121 DKYPWQLSGGMQQR 134 G Sbjct: 137 VVRKPDGEGHAVLT 150 >SMc01823 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 304 Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/134 (52%), Positives = 89/134 (66%) Query: 1 MRYQTDTADVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKS 60 + ++T V AL V+LD+ KG+FVS +GPSGCGKTT LR++ADL T G ++V G + Sbjct: 57 LTFETSDGPVNALTGVNLDVVKGDFVSFIGPSGCGKTTFLRVIADLEKATAGTISVNGMT 116 Query: 61 AREARLAQKYGIVFQSPVLYDWRKVRHNITLPLELMGVKKSIREDKALELLDLVGLQGFA 120 EAR + YG VFQ+ LY WR + NI LPLE+MG R+ + L+LV L GF Sbjct: 117 PEEARRRRAYGYVFQAAALYPWRTIEKNIALPLEIMGYSSEDRKARIERTLELVNLSGFG 176 Query: 121 DKYPWQLSGGMQQR 134 KYPWQLSGGMQQR Sbjct: 177 KKYPWQLSGGMQQR 190 >AGc1932 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 816 Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 9/141 (6%), Positives = 19/141 (13%), Gaps = 10/141 (7%) Query: 1 MRYQTDTADVLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKS 60 A+ A L G Sbjct: 12 SEV-GANAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 70 Query: 61 AREARLAQKYGIVFQSPVLYDWRKVRHNITLPLEL-------MGVKKSIREDKALELLDL 113 A V + R + +I + + + D+ + Sbjct: 71 ADLV--TVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYKVSG 128 Query: 114 VGLQGFADKYPWQLSGGMQQR 134 + Sbjct: 129 GLHGVGVSVVNALSVWLKLRI 149 >mll8572 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 257 Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Query: 10 VLALHQVSLDIAKGEFVSLLGPSGCGKTTLLRLMADLLTPTGGDVTVAGKSAREARLAQK 69 V L + L + G F+S+LGPSGCGK+TLLR++ADLL P GG ++V G + R + Sbjct: 21 VKVLSGLDLSVEAGSFLSILGPSGCGKSTLLRVVADLLDPLGGTISVLGDTPHAVRSRRD 80 Query: 70 YGIVFQSPVLYDWRKVRHNITLPLEL-MGVKKSIREDKALELLDLVGLQGFADKYPWQLS 128 G VFQ L WR VR N+ LPL + G ED++ ELL+L+GL GF ++ P QLS Sbjct: 81 VGFVFQDSTLLPWRTVRDNVRLPLGIGQGSLTRKIEDRSEELLELMGLAGFGERLPHQLS 140 Query: 129 GGMQQR 134 GG +QR Sbjct: 141 GGQRQR 146 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,813,057 Number of extensions: 490190 Number of successful extensions: 15842 Number of sequences better than 1.0e-05: 1397 Number of HSP's gapped: 14732 Number of HSP's successfully gapped: 1442 Length of query: 154 Length of database: 38,378,431 Length adjustment: 97 Effective length of query: 57 Effective length of database: 27,191,033 Effective search space: 1549888881 Effective search space used: 1549888881 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)