BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0005.p (208 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3456 [R] COG1268 Uncharacterized conserved protein 87 2e-17 L24031 [R] COG1268 Uncharacterized conserved protein 80 1e-15 mlr7429 [R] COG1268 Uncharacterized conserved protein 78 9e-15 BMEI0319 [R] COG1268 Uncharacterized conserved protein 72 6e-13 CAC0211 [R] COG1268 Uncharacterized conserved protein 65 7e-11 >CAC3456 [R] COG1268 Uncharacterized conserved protein Length = 179 Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 7/163 (4%) Query: 9 KWTTRGLIFSALFAGVMIALSYLRISLPFSTVPITMQTLAVMLAGSMLGARYGSXXXXXX 68 K +T+ L+ ALFA + L+ + I LPFS VP TMQ +AV LAG +LGA+ G Sbjct: 2 KISTKDLVLCALFAAISCVLAQISIQLPFSPVPFTMQVMAVYLAGIILGAKKGFISQLVY 61 Query: 69 XXXXXXXFPVLAG-SGGLSVLTGPTAGYIFSWPVVAFLIGLFAQRIEQNKYTFVKLLAVN 127 PV A +GG+ + GP G+I ++P +A ++G A + Y + ++ + Sbjct: 62 VVLGAIGAPVFANFTGGVGAILGPAGGFIIAFPFMALIVGCVADKCRTKAYIIISMVLAS 121 Query: 128 FLFGVLLVYPGGVWWLAHSTGMTSLSKALTAGMWPFIPGDLIK 170 ++ Y G WL T + S + A+ + PFI D++K Sbjct: 122 -----VVCYVFGALWLVLVTKI-SFALAIKTAVLPFILFDMLK 158 >L24031 [R] COG1268 Uncharacterized conserved protein Length = 311 Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 11/182 (6%), Positives = 33/182 (18%), Gaps = 11/182 (6%) Query: 8 KKWTTRGLIFSALFAGVMIALSYLR-ISLPFSTVPITMQTLAVMLAGSMLGARYGSXXXX 66 + + L + ++ + + G Sbjct: 3 RNFFKHLLESLKNLKRNGWMTVAAVSSVTITLVLVGLFLSVILNTSKISNGIENNVRIVA 62 Query: 67 XXXXXXXXXFPVL-AGSGGLSVLTGPTAGYIFSWPVVAFLIGLFAQRIE-QNKYTFVKLL 124 + + P I+ + + K L Sbjct: 63 YMKLDVHDQETKIQDPKDNKKTINNPDHLKIYDSIKKVPNVKTVEFSSKEAQLKELTKAL 122 Query: 125 AVNFLFGVLLVYPGGVWWLAHSTG---MTSLSKALTAGMWPFIPGDLIKAVLSAAVVTAV 181 N+ P ++ + + S++ ++ + G A Sbjct: 123 GNNWNLFKGDANPLYDAYIVEADKPANVKSVTSKIS-----KLSGIEKATYGGANTAKLF 177 Query: 182 WR 183 Sbjct: 178 QI 179 >mlr7429 [R] COG1268 Uncharacterized conserved protein Length = 254 Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 10 WTTRGLIFSALFAGVMIALSYLRISLPFSTVPITMQTLAVMLAGSMLGARYGSXXXXXXX 69 W ++ LF +ALS I +P VP+TMQT AV L G++ G R G+ Sbjct: 82 WQVGAVVLGTLF----LALSSY-IEVPMVPVPVTMQTFAVTLIGALYGWRLGAVTIAAWL 136 Query: 70 XXXXXXFPVLA-GSGGLSVLTGPTAGYIFSWPVVAFLIGLFAQRIEQNKYTFVKLLAVNF 128 FPVLA G+ G++ GPT GY+F++P+ L+G A+R + A+ Sbjct: 137 VEGAAGFPVLAGGAAGVAHFVGPTGGYLFAFPITGALVGWLAERGWNGNRVVLAFAAM-- 194 Query: 129 LFGVLLVYPGGVWWLAHSTGMTSLSKALTAGMWPFIPGDLIKAVLSAAVVTAV 181 L G L G WLA M KA+T G PFI G L+K+ L AA + A+ Sbjct: 195 LLGNLACLVLGTAWLAV---MIGTEKAITFGFLPFIVGGLLKSALGAATLMAL 244 >BMEI0319 [R] COG1268 Uncharacterized conserved protein Length = 191 Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 32 RISLPFSTVPITMQTLAVMLAGSMLGARYGSXXXXXXXXXXXXXFPVLA-GSGGLSVLTG 90 +I +P VPIT+QTL V L G++ G R G PVLA G+ GL G Sbjct: 40 QIEVPMVPVPITLQTLIVPLIGALYGWRLGLATVLAWLGEAMIGLPVLAGGASGLVHFMG 99 Query: 91 PTAGYIFSWPVVAFLIGLFAQRIEQNKYTFVKLLAVNFLFGVLLVYPGGVWWLAHSTGMT 150 PT GY+ ++P++A + G A+R N + V L V+FL L G WL+ G Sbjct: 100 PTGGYLAAFPLIAVMTGYLAER-GWNGHN-VGLAFVSFLAANLFALAMGALWLSSVIG-- 155 Query: 151 SLSKALTAGMWPFIPGDLIKAVLSAAVVTAVWR 183 + KA+ G+ PF+ G +IK+ L AA++ A R Sbjct: 156 -IEKAVALGVMPFLIGGVIKSALGAAILKATAR 187 >CAC0211 [R] COG1268 Uncharacterized conserved protein Length = 184 Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 14/184 (7%) Query: 9 KWTTRGLIFSALFAGVMIALSYLRISLPFSTVPITMQTLAVMLAGSMLGARYGSXXXXXX 68 K+ TR L+ LF + I ++++I P VPI +Q L L+G +LG G+ Sbjct: 2 KFKTRDLVLIPLFTAMTIIGAFIKI--PVGVVPINLQFLFTALSGVLLGGALGAVSQILY 59 Query: 69 XXXXXXXFPVLAGSGGLSVLTGPTAGYIFSWPVVAFLIGLFAQRIEQNKYTFVKLLAVNF 128 PV GGLS + PT GY+ + + AF+IG +I ++ + + Sbjct: 60 VALGLIGLPVFTSGGGLSYIFTPTFGYLIGYILAAFIIG----KITHSRKPKFTTIFFSC 115 Query: 129 LFGVLLVYPGGVWW----LAHSTGMT-SLSKALTAGMWPFIPGDLIKAVLSAAVVTAVWR 183 + G++ VY G + L + G S+ ++ G+ FIPGD++K +++A + + R Sbjct: 116 ILGLIAVYFIGTTYLYIILNYVAGKNVSIIASIKLGVLMFIPGDIVKCIITALLGS---R 172 Query: 184 VYPI 187 + PI Sbjct: 173 ILPI 176 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.138 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,183,058 Number of extensions: 496948 Number of successful extensions: 1655 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 1640 Number of HSP's successfully gapped: 10 Length of query: 208 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 106 Effective length of database: 26,614,363 Effective search space: 2821122478 Effective search space used: 2821122478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 113 (48.1 bits)