BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0003.p (190 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3101 [P] COG1122 ABC-type cobalt transport system, ATPase com... 127 1e-29 TM0222 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 121 5e-28 L76755 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 120 2e-27 CAC1368 [P] COG1122 ABC-type cobalt transport system, ATPase com... 115 3e-26 SP2220 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 115 3e-26 >CAC3101 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 286 Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 9/156 (5%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDGG---------QPPA 68 L ++++ I +G V G TGSGKSTL++ ++GL +P SG+I D Sbjct: 23 LDNVNITIEDGEFAVFIGHTGSGKSTLIQQINGLLKPTSGSIFIDDVDITDKSVKLNDIR 82 Query: 69 GKVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSP 128 KV +VFQ PE QLF ++ K++ +G G+ + ++ A+ VGL Y++F +SP Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPRNMGLSEEEVSTRVKKAMKMVGLEYNDFKDKSP 142 Query: 129 FLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 F LSGG+KRR+ IA +A P +L+LDEPTAGLDP+ Sbjct: 143 FELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPK 178 >TM0222 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 266 Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 5/151 (3%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAFDG----GQPPAGKVSM 73 L ++SL I EG ++ G TGSGKSTLL++++GL +P SG + +DG G + + Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82 Query: 74 VFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRRSPFLLSG 133 FQ PE Q FA V E+ + + + P + L++ A+ VGL +D F R PF LSG Sbjct: 83 AFQYPEDQFFAERVFDEVAFAV-KNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSG 141 Query: 134 GEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 GEKRR+ IA+ I P +L+LDEP GLD + Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 >L76755 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 288 Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 12/158 (7%) Query: 18 LTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIAF-----------DGGQP 66 L DI L++++G+ T L G TGSGKSTLL+ L+GL QP GT+ +P Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTQGTVRVGDIVVTSTSKQKEIKP 81 Query: 67 PAGKVSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSALARVGLPYDEFGRR 126 KV +VFQ PE+QLF +V K++ +G G+ + ++ L VGL EF + Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGISKEEAEKIAAEKLEMVGLS-KEFWEK 140 Query: 127 SPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 SPF LSGG+ RR+ IA +A P +LVLDEPTAGLDP+ Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 >CAC1368 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 279 Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 11/172 (6%) Query: 2 RIQADHVSFRY-DKLPVLTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASGTIA 60 +I ++V + Y D L DI++ I++G + G G+GKSTL +L+G+ P SG + Sbjct: 3 QISINNVDYIYSDGFEALHDINMSIKKGERVAILGPNGAGKSTLFNMLNGIISPTSGEVK 62 Query: 61 FDGGQPPAGK--------VSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRLELIRSA 112 +G K V MVFQ + QLF SV +E+ YGL V + ++ A Sbjct: 63 INGLDTKVKKNLNVIRRDVGMVFQDSDDQLFNSSVMQEIAYGLVNMKVSEEELQSRVKWA 122 Query: 113 LARVGLPYDEFGRRSPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDPQ 164 L V + D F ++SP LSGG+K+R+ +A+ +A P +LVLDEPT LDP+ Sbjct: 123 LNVVNM--DGFEKKSPHNLSGGQKKRIALASVLAMKPEVLVLDEPTVSLDPR 172 >SP2220 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 279 Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 17/177 (9%) Query: 3 IQADHVSFRYDK-----LPVLTDISLDIREGTLTVLCGVTGSGKSTLLRLLSGLAQPASG 57 I ++V+F Y + L+D+SL I +G+ T L G TGSGKST+L+LL+GL P+ G Sbjct: 3 IALENVNFTYQEGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPSQG 62 Query: 58 TI-AFDGGQPPAGK----------VSMVFQQPETQLFAGSVHKELEYGLAERGVPGPQRL 106 ++ FD K V +VFQ E Q+F +V K++ +G GV + Sbjct: 63 SVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEEDAV 122 Query: 107 ELIRSALARVGLPYDEFGRRSPFLLSGGEKRRLCIAAAIASAPGLLVLDEPTAGLDP 163 + R LA VG+ F R SPF LSGG+ RR+ IA +A P +LVLDEPTAGLDP Sbjct: 123 KTAREKLALVGIDESLFDR-SPFELSGGQMRRVAIAGILAMEPAILVLDEPTAGLDP 178 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,021,371 Number of extensions: 591395 Number of successful extensions: 6694 Number of sequences better than 1.0e-05: 1814 Number of HSP's gapped: 4751 Number of HSP's successfully gapped: 1915 Length of query: 190 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 90 Effective length of database: 26,845,031 Effective search space: 2416052790 Effective search space used: 2416052790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)