BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0002.p
         (382 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA2019 [P] COG0619 ABC-type cobalt transport system, permease co...    57   6e-08
L77627 [P] COG0619 ABC-type cobalt transport system, permease co...    50   6e-06

>SA2019 [P] COG0619 ABC-type cobalt transport system, permease component
           CbiQ and related transporters
          Length = 268

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 11/125 (8%)

Query: 244 TETTTGAPLREGLEWGIAPLRKLGVRTRNWSLAVSVTLQFVPWILGKLAQLQLALDSRGR 303
           T +T+   L +  E  +APL+   +     S+ +S+ L+F+P ++ +L ++ LA  SRG 
Sbjct: 128 TLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGS 187

Query: 304 K------ARGLARYSPRQAAXXXXXXXXXXXGMGDELATAVESRGYDPAKERTPSYRLSW 357
           +      A  +  + P                  +ELA A+E RGYD   +RT   +L W
Sbjct: 188 EISSGNIATRIKSFIPLLVPLFISAFQR-----AEELAVAMEVRGYDANVKRTSYRQLKW 242

Query: 358 QNRDT 362
           Q RDT
Sbjct: 243 QLRDT 247


>L77627 [P] COG0619 ABC-type cobalt transport system, permease component
           CbiQ and related transporters
          Length = 266

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 254 EGLEWGIAPLRKLGVRTRNWSLAVSVTLQFVPWILGKLAQLQLALDSRGRK-ARGLARYS 312
           +G+E G+ PL+K+ V      L +S++L+F+P ++     +  A  +RG     G     
Sbjct: 137 DGIEKGLGPLKKIKVPVHELGLMLSISLRFIPTLMDDTTMIMNAQKARGMDFGEGNLLKK 196

Query: 313 PRQAAXXXXXXXXXXXGMGDELATAVESRGYDPAKERTPSYRLSWQNRDT 362
            +                 D+LA A+ESRGY     RT   +L W+ RD+
Sbjct: 197 IKSVIPILIPLFVSSFRRADDLAVAMESRGYQGGDGRTKYRQLKWKMRDS 246


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,344,278
Number of extensions: 516569
Number of successful extensions: 1721
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1721
Number of HSP's successfully gapped: 4
Length of query: 382
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 274
Effective length of database: 25,922,359
Effective search space: 7102726366
Effective search space used: 7102726366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)