BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0016.p
         (177 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L160442 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase    155   4e-38
L25115 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase     153   1e-37
STM0206 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ...   105   4e-23

>L160442 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase
          Length = 180

 Score =  155 bits (391), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 118/167 (70%)

Query: 4   LQNVLVHKDALQQRVRELGADISRDYAGKDLVLIGILKGAAVFMADLMREISFPVGIDFM 63
           L+ VL  ++ + +RV+EL   +SRDY GK+ +++GILKG+ +F  DL++E+S    +DFM
Sbjct: 5   LKEVLFTREQIAERVKELAEVVSRDYEGKNPLVVGILKGSIMFTVDLLKELSIDAEVDFM 64

Query: 64  AVSSYGTAATTSGAVIIKKDIDTDIRGRHILLVEDLIDTGLTLKHLKEHFLNSGALSVRI 123
            V+SYG   ++SG V I KD+ T   GR IL+VED+IDTG TL +LK+      A SV+I
Sbjct: 65  DVTSYGYGISSSGEVRILKDLSTVAHGRDILIVEDIIDTGNTLLYLKKLLTGRQAHSVKI 124

Query: 124 CTILNKPSRRLADVEVEYSGIEIPDEFVVGYGLDYAEQYRNLPEVWV 170
            ++L+KPS R  D++ +Y G E+PD F+VGYG+DYAE+YR LP + +
Sbjct: 125 ISLLDKPSGRKVDIDADYVGFEVPDAFIVGYGIDYAERYRQLPYIGI 171


>L25115 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase
          Length = 311

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 14/169 (8%), Positives = 36/169 (21%), Gaps = 1/169 (0%)

Query: 4   LQNVLVHKDALQQRVRELGADISRDYAGKDLVLIGILKGAAVFMADLMREISFPVGIDFM 63
           L+++   K      V  + +           + + +         +    I   + +D  
Sbjct: 10  LESLKNLKRNGWMTVAAVSSVTITLVLVGLFLSVILNTSKISNGIENNVRIVAYMKLDVH 69

Query: 64  AVSSYGTAATTSGAVIIKKDIDTDIRGRHILLVEDLIDTGLTLKHLKEHFLNSGALSVRI 123
              +       +   I   D          +     ++       LKE     G  +  +
Sbjct: 70  DQETKIQDPKDNKKTINNPDHLKIYDSIKKVPNVKTVEFSSKEAQLKELTKALGN-NWNL 128

Query: 124 CTILNKPSRRLADVEVEYSGIEIPDEFVVGYGLDYAEQYRNLPEVWVVK 172
                 P      VE +           +       +          + 
Sbjct: 129 FKGDANPLYDAYIVEADKPANVKSVTSKISKLSGIEKATYGGANTAKLF 177


>STM0206 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic
           component
          Length = 266

 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 7/171 (4%), Positives = 22/171 (12%), Gaps = 7/171 (4%)

Query: 6   NVLVHKDALQQRVRELGADISRDYAGKDLVL--IGILKGAAVFMADLMREI-SFPVGIDF 62
            +     AL   +        R                   V ++               
Sbjct: 4   QMFRALVALLLTLPVWLYAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPEAQKIEQV 63

Query: 63  MAVSSY-GTAATTSGAVIIKKDIDTDIRGRHILLVEDLIDTGLTLKHLKEHFLNSGALSV 121
                                           +     +   +           +  L  
Sbjct: 64  STWQGMNLERIV--ALKPDLVVAWRGGNAERQVNQLTSLGIKVMWVDAVTIEQIADTLRQ 121

Query: 122 RICTILNKPSRRLADVEVEYSGIEIPDEFVVGYGLDYAEQYRNLPEVWVVK 172
                      + A  +   +     +    G           +  ++   
Sbjct: 122 LAAWSPQPEKAQQA-AQTLLNEYAALNAEYAGKAKKRVFLQFGMNPLFTSG 171


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,681,212
Number of extensions: 570991
Number of successful extensions: 1299
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1297
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 78
Effective length of database: 26,960,365
Effective search space: 2102908470
Effective search space used: 2102908470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)