BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0009.p
         (277 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3047 [O] COG0755 ABC-type transport system involved in cytochr...   100   4e-21
BS_hemX [O] COG0755 ABC-type transport system involved in cytoch...    68   2e-11

>BH3047 [O] COG0755 ABC-type transport system involved in cytochrome c
           biogenesis, permease component
          Length = 271

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 49  ILQAAGLAVRFSQEQGLPIFTPYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSV 108
           +LQ     +R      LPI TP++ LF++++++V  SL +      +F +  +++ GF  
Sbjct: 43  LLQTVFFIIRAIDLNRLPIITPFEGLFFYAWVVVTLSLIINRVFRVDFLVFFVNIIGFV- 101

Query: 109 FLLNRVWLTAEDHTLQSWSA--VHGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKH 166
            +++    T +    +S ++  +   L +H+ +  LS+A LTL   F+ +Y+  H  LK 
Sbjct: 102 -MMSFSLFTPDGDVPESLASLLISELLIIHVSMILLSYAGLTLAFAFSALYVLEHQMLKR 160

Query: 167 KKWDDRIRRLPSLETMDKYSYTAILAGVPLLLASLVLAGM-SIVAEGRTPLFQDTKVLTT 225
           KKW  R+ RL SL  +D+Y++ + +   PL L  ++L  + + +  G  P F D KV+++
Sbjct: 161 KKWGKRLLRLGSLTKLDQYAFHSTMFAFPLFLIGIILGFVWASIQFGELPWF-DAKVISS 219

Query: 226 LIGLAVYIIYILLKRSARRSGTSMARWAIAGYGFIILN-FLLNSWSEFHGW 275
           +I +  Y +Y+  +    + G SMA   +A +  I++N FL  S S FH W
Sbjct: 220 MIVMCGYAVYLYQRVVKMKRGYSMALLNVACFLLILINYFLPGSLSTFHLW 270


>BS_hemX [O] COG0755 ABC-type transport system involved in cytochrome c
           biogenesis, permease component
          Length = 276

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 1/209 (0%)

Query: 66  PIFTPYDFLFWFSFIIVLTSLAVAYTRGGEFTILLLSMAGFSVFLLNRVWLTAEDHTLQS 125
           P+    + L+++++++V  SL +      +F +   ++ GFS+  ++    T +     S
Sbjct: 65  PVLNVTEALYFYAWVLVTLSLVLTKLLRVDFIVFFTNVIGFSMIAIHTFSPTEQQSAAFS 124

Query: 126 WSAVHGWLALHIILANLSFAALTLGTVFAIMYLFLHTRLKHKKWDDRIRRLPSLETMDKY 185
              V   L +HI +A LS+ A +L  VF+++Y+F +  LK KKW   + R+  L  +D  
Sbjct: 125 GQLVSELLVIHITMAILSYGAFSLSFVFSVLYMFQYHVLKKKKWGKWLLRIEDLSKLDYM 184

Query: 186 SYTAILAGVPLLLASLVLAGMSIVAEGRTPLFQDTKVLTTLIGLAVYIIYILLKRSARRS 245
           +Y   + GVP+LL SL+L  +       T  + D KVL + + L +Y  Y+ ++      
Sbjct: 185 AYVLNVIGVPMLLLSLILGVIWAYVSLETLYWFDAKVLGSFVVLLLYSYYLYIRLIKELQ 244

Query: 246 GTSMARWAIAGYGFIILN-FLLNSWSEFH 273
           G   A W  A +  +++N FLL S S+FH
Sbjct: 245 GKVAALWNTACFLVLMINYFLLGSLSQFH 273


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.329    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,840,842
Number of extensions: 700552
Number of successful extensions: 1757
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1756
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 172
Effective length of database: 26,268,361
Effective search space: 4518158092
Effective search space used: 4518158092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 115 (48.9 bits)