BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0175.0020.p
         (163 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR1146 [R] COG3871 Uncharacterized stress protein (general stres...   129   2e-30
DR1181 [R] COG3871 Uncharacterized stress protein (general stres...    63   2e-10

>DR1146 [R] COG3871 Uncharacterized stress protein (general stress protein
           26)
          Length = 193

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 13/162 (8%)

Query: 7   SHQEAVETVRELIKGIDTAMFTTISEEGLVF-RPMKTQEVEFDGDLWFMTKKDTSKFGEI 65
           S  EAV+TV  L+KGI  AM  ++++ G +  RPM TQE EFDGD+WF+  KD+    E+
Sbjct: 31  SRDEAVKTVAGLVKGIKFAMLVSVNDAGHIHSRPMTTQETEFDGDIWFIGAKDS----EV 86

Query: 66  IHD----PRVNVVYAD---KSYVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVI 118
           +HD    P+VNV YAD    +YVS+ GTA+++ED  K  E WS  YN + +    DP+V 
Sbjct: 87  VHDVRSRPQVNVSYADTGSNNYVSVHGTAELIEDRAKLDELWSDMYNMYFEGGKEDPNVQ 146

Query: 119 LIQVHAEAAEYWKSGN-LAEMATYMFKRITHQDTEKSDLNKT 159
           LI+++AE AEYW+SG  +  +  +    I  Q  + S+L K 
Sbjct: 147 LIKINAEGAEYWESGGKVRTLFAFAKNLIPGQRADASELGKN 188


>DR1181 [R] COG3871 Uncharacterized stress protein (general stress protein
           26)
          Length = 137

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 19  IKGIDTAMFTTISEEG-LVFRPMKTQ-EVEFDGDLWFMTKKDTSKFGEIIHDPRVNVVYA 76
           ++GID  +F T +  G +  RPM    EVE+DG+ +F T KD+    +I  D +V++ + 
Sbjct: 12  MRGIDLCLFATHTAYGHIAQRPMSNNGEVEYDGNSYFFTWKDSRTVHDIEKDAKVSLGFQ 71

Query: 77  DKS--YVSIRGTAKIVEDLEKKKEFWSAGYNTFLKTTYNDPDVILIQVHAEAAEYWKSGN 134
            K   +V++ G A + E     +  W+   + + +     P + +I+V A    YW+ G+
Sbjct: 72  GKGGLFVAVEGHATVTEHRPTMQPHWTPDLDQWFEQGLETPGICMIRVEATRIAYWQKGD 131

Query: 135 LAEM 138
             E+
Sbjct: 132 EGEI 135


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,801,920
Number of extensions: 452282
Number of successful extensions: 788
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 65
Effective length of database: 27,075,699
Effective search space: 1759920435
Effective search space used: 1759920435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)