BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0017.p (369 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0840 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 343 4e-94 CC2129 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 334 1e-91 CC1802 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzym... 316 3e-86 SMa2291 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzy... 147 3e-35 YPO0589_1 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow En... 135 8e-32 >PA0840 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 343 bits (879), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 0/365 (0%), Positives = 0/365 (0%), Gaps = 7/365 (1%) Query: 11 LETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM-I 69 + AE + Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 70 DHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAPS 129 + + + + ++ G R L + + Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 130 IGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFWE 189 + + + + + + + Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAF 184 Query: 190 KTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQL 249 + L R + ++ Y+ T Sbjct: 185 GVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGK 244 Query: 250 EQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDNDP-- 307 A +F TR + + +A+ V Sbjct: 245 YLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVAS 304 Query: 308 ----AEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPD 363 Sbjct: 305 TLLG 364 Query: 364 AAAKL 368 Sbjct: 365 369 >CC2129 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 0/366 (0%), Positives = 0/366 (0%), Gaps = 10/366 (2%) Query: 10 SLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIITVGM- 68 + + +A + + Sbjct: 2 QYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 69 IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAP 128 LA + +V I P + Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121 Query: 129 SIGPSGLDMQG-NKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFF 187 + ++ I Sbjct: 122 Q----TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG 177 Query: 188 WEKTNQRTDRYGGDFL-KRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTP 246 K + + + G Sbjct: 178 VSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG 237 Query: 247 EQLEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGMDND 306 + + RF ++ A +V Sbjct: 238 FGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVR 297 Query: 307 ---PAEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQAFTPD 363 Sbjct: 298 RQP 357 Query: 364 AAAKLY 369 Sbjct: 358 363 >CC1802 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 316 bits (810), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 0/363 (0%), Positives = 0/363 (0%), Gaps = 8/363 (2%) Query: 6 EQIYSLETLFEPYTIHRLTIPNRIVMSPMARAFSPEGVPGEDMAAYYRRRAENGVGLIIT 65 Q + + H I + + + D A + E + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 66 VGM-IDHPAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQP- 123 + P + + + + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGK-LGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVS 179 Query: 124 YPDAPSIGPSGLDMQGNKISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLI 183 A + + + +T + ++ L+ Sbjct: 180 NETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFG 239 Query: 184 DQFFWEKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLV 243 + R D L +M + Sbjct: 240 TLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQ 299 Query: 244 DTPEQLEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKTTIAVGSVGM 303 Sbjct: 300 359 Query: 304 DNDPA----EGEET-DHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEIQ 358 Sbjct: 360 419 Query: 359 AFT 361 Sbjct: 420 422 >SMa2291 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 14/347 (4%), Positives = 45/347 (12%), Gaps = 33/347 (9%) Query: 14 LFEPYTIHRLTIPNRIVMSPMAR-AFSPEGVPGEDMAAYYRRRAENGVGLIITVGM-IDH 71 L A G ++ + Sbjct: 11 LEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVG 70 Query: 72 PAATSDPGLANIFGEAAMNGWREVIRQVHEAGGRIVPQLSHMGMIRPMGSQPYPDAPSIG 131 + + ++G + + + + + + Sbjct: 71 NWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDS--LKRL-QTDYLD 127 Query: 132 PSGLDMQGNKIS-----------EPMTEEEIARVIRXXX-XXXXXXXXXGFDGIELSGGH 179 + + + + G G Sbjct: 128 LYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVM 187 Query: 180 GLLIDQFFWEKTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYT 239 L + T + L R+ + Sbjct: 188 RYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLN 247 Query: 240 AKLVDTPEQLEQFLNVLVQAGVDIFHISTRRFWDPEFAGSELGFAGWVKKLTGKT-TIAV 298 ++ A + + + Sbjct: 248 GAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLL 307 Query: 299 GSVGMDNDPAEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSW 345 G+ + + +L A + Sbjct: 308 GAT---TMDQLKTNIESLHL------------ELSEDVLAEIEAVHQ 339 >YPO0589_1 [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family Length = 346 Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 14/354 (3%), Positives = 37/354 (10%), Gaps = 37/354 (10%) Query: 14 LFEPYTIHRLTIPNRIVMSPMARAFS--PEGVPGEDMAAYYRRRAENGVGLIITVGMIDH 71 + L + + A + + Sbjct: 7 PHSSLEVSTLGLGTMTFGEQNSEADAHAQLD--YAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 72 PAATSDPGLANIFGEAAMNGWREVIRQ-VHEAGGRIVPQLSHMGMIRPMGSQPYPDAPSI 130 G + I P + + Sbjct: 65 TETYVGNW-LAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRK---NIREALH----D 116 Query: 131 GPSGLDMQGNK-ISEPMTEEEIARVIRXXXXXXXXXXXXGFDGIELSGGHGLLIDQFFWE 189 L + + + + + Sbjct: 117 SLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYI 176 Query: 190 KTNQRTDRYGGDFLKRTRFXXXXXXXXXXXXGPDYPISIRLSQWKMGDYTAKLVDTPEQL 249 + T +L S + ++ Y + Sbjct: 177 GVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELL----A 232 Query: 250 EQFLNVLVQAGVDIFHISTRRFWD----PEFAGS--ELGFAGWVKKLTGKTTIAVGSVGM 303 L G + + V Sbjct: 233 YSCLGFGTLTGKYL--NGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQ 290 Query: 304 DNDPAEGEETDHQGMEELLKRLDNQEFDLVAVGRALLGDPSWAKKIREGRPEEI 357 + L + Sbjct: 291 MALAFVRRQPFVASTL-----------LGATTMDQLKTNIESLHLELSEDVLAE 333 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,392,872 Number of extensions: 1188376 Number of successful extensions: 2358 Number of sequences better than 1.0e-05: 81 Number of HSP's gapped: 2180 Number of HSP's successfully gapped: 81 Length of query: 369 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 261 Effective length of database: 25,922,359 Effective search space: 6765735699 Effective search space used: 6765735699 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)