BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0175.0015.p
         (261 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF1009 [K] COG1378 Predicted transcriptional regulators                61   2e-09
TVN0213 [K] COG1378 Predicted transcriptional regulators               60   4e-09
MA2057 [K] COG1378 Predicted transcriptional regulators                57   2e-08
MA2207 [K] COG1378 Predicted transcriptional regulators                56   6e-08
PH0751 [K] COG1378 Predicted transcriptional regulators                54   2e-07

>AF1009 [K] COG1378 Predicted transcriptional regulators
          Length = 247

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MIEALRKLGLSDLEARCYLALHGQSPSSGYEVSKQVSVSRSNVYAALRGLVEKGVCRAEE 60
          +++ LR  GLS  EA  Y+AL     ++  EVS++  + R+ VY  L  LVEKG    + 
Sbjct: 4  LLKTLRDFGLSSYEASAYVALVSSGETTAREVSRKAGIPRTKVYEVLNRLVEKGFAEVQP 63

Query: 61 GEPVTFAAIPIGQVVKLLQSEF-ERTARLLES 91
          G P  F AI   ++   +Q +F ER  ++L++
Sbjct: 64 GSPAIFRAIEPAKIAARMQRDFNERLGKMLKA 95


>TVN0213 [K] COG1378 Predicted transcriptional regulators
          Length = 352

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 5   LRKLGLSDLEARCYLALHGQSPSSGYEVSKQVSVSRSNVYAALRGLVEKGVCRAEEGEPV 64
           L KLGL+  E + Y  L    P S  E +K   V +  VY     L  KG      G+  
Sbjct: 12  LSKLGLTPYEIKIYKTLLIYGPKSATETAKLSRVPQPRVYDIFESLESKGAVEVSPGKKK 71

Query: 65  TFAAIPIGQVV--KLLQ-SEFERTARLLESELTPLPDPPPFFSNWKGDQQVDLAVRRLAA 121
            + A+P+   +  KL++  ++++  +    +     +  P+    K + Q+   ++ +  
Sbjct: 72  IYRAVPVDNFIDRKLIEIKDYKQRIQSYIEKQKKFKETAPYLWMIKNNFQIREKMKDVIT 131

Query: 122 NARDQILVDLWAEDLHRVEESLLAAERRGTAVHLMVIGEAPTELKQV----IIHSVPPGG 177
           N++ +I+  L  E+L  ++   + A ++G  V L+V  +A ++  +     I+    PG 
Sbjct: 132 NSKYEIITSLNYENLRYLKRYFIDAVKKGLTVVLVVFPDAESDFLKTLPDDIVIKKRPGS 191

Query: 178 PNKSRNFSMLLDKETAILGSFSRH-APASALESNHPAVLNVLDTSYFHDV 226
            ++     ++ D+   I+   S+  +   AL  N   ++++L+  ++H +
Sbjct: 192 ASQ----VIISDRNDGIINVESKEDSEGYALYFNESELIHILNYYFYHTI 237


>MA2057 [K] COG1378 Predicted transcriptional regulators
          Length = 109

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%)

Query: 1   MIEALRKLGLSDLEARCYLALHGQSPSSGYEVSKQVSVSRSNVYAALRGLVEKGVCRAEE 60
           +I+ L+KLG ++ EA+ Y  L     +   E+S+   V R+ VY  LRG+ +KG  R  E
Sbjct: 5   LIKNLQKLGFTENEAKIYAVLVCLGQARASEISRAAGVPRAKVYGILRGMGKKGYVRILE 64

Query: 61  GEPVTFAAIPIGQVVKLLQSEFERTARLLESELTPL 96
           G+P+ F      +++  ++++F R+ R   S L  L
Sbjct: 65  GDPILFCCTRPEEMITRIRADFMRSLRETSSGLNAL 100


>MA2207 [K] COG1378 Predicted transcriptional regulators
          Length = 119

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 48/82 (58%)

Query: 1  MIEALRKLGLSDLEARCYLALHGQSPSSGYEVSKQVSVSRSNVYAALRGLVEKGVCRAEE 60
          +I  L+KLG ++ EA+ Y AL     ++  E+ +   V R  VY  LRG+ EKG  +  E
Sbjct: 5  LINNLQKLGFTENEAKIYAALVCMKTATAREIYETSGVPRPKVYKVLRGMEEKGYVQIIE 64

Query: 61 GEPVTFAAIPIGQVVKLLQSEF 82
          GEP+ F+ I   +++  ++++F
Sbjct: 65 GEPIRFSCISPEELITRIRNDF 86


>PH0751 [K] COG1378 Predicted transcriptional regulators
          Length = 357

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 1   MIEALRKLGLSDLEARCYLALHGQSPSSGYEVSKQVSVSRSNVYAALRGLVEKGVCRAEE 60
           ++E L++LGL+  EA  YLA+  ++ ++  ++ + + V +  +Y  ++ L+ KG  RA  
Sbjct: 7   IVEKLQELGLTKREAEVYLAILMKNGATVKDLLETLDVHQPQLYNIIQSLIRKGFIRASA 66

Query: 61  GEPVTFAAIPIGQVVKLLQSEFERTARLLESELTPLPD---PPPFFSNWKGDQQVDLAVR 117
           G P  + A  I  ++ + + + +   R+L+ EL  + +     P+ S  +  + V  +  
Sbjct: 67  GRPRVYTANDITALIDVQKMKLDSLKRILQEELGKIRENEGEEPYISYVRSLEGVLASAI 126

Query: 118 RLAANARDQILVDLWAEDLHRVEESLLAAERRGTAVHLMV 157
               +A  +I  +L  +    +    ++A RRG  ++L+V
Sbjct: 127 ETINSAEVEIRAELPYQIYKELSPYFVSALRRGINLYLLV 166


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,288,346
Number of extensions: 694378
Number of successful extensions: 3496
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3497
Number of HSP's successfully gapped: 11
Length of query: 261
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 157
Effective length of database: 26,383,695
Effective search space: 4142240115
Effective search space used: 4142240115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)