BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0002.p
         (148 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0863 [M] COG1686 D-alanyl-D-alanine carboxypeptidase                90   1e-18

>STM0863 [M] COG1686 D-alanyl-D-alanine carboxypeptidase
          Length = 400

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 8/148 (5%), Positives = 25/148 (16%)

Query: 1   MKVIFIKDXXXXXXXXXXXEVSEGYASNFLLPRGLVRPATEGNVKTLENQAAAEKRRKDQ 60
           M                    +    +           A    +    +     +   D+
Sbjct: 1   MTQYASSLRSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADE 60

Query: 61  EKEEAVQLGKKLDELTLTLKAKAGEGGRLFGAITSKQIGETLTAAHGITIDKRKIELSDP 120
           + + A         +                 +          A  G ++   K      
Sbjct: 61  KLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVS 120

Query: 121 IRHVGTFQVTVKLHTEVKANLTVQVTEE 148
           +  +    +    +    A        +
Sbjct: 121 VADLNKGIIIQSGNDACIALADYVAGSQ 148


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.131    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,792,173
Number of extensions: 338347
Number of successful extensions: 555
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 51
Effective length of database: 27,191,033
Effective search space: 1386742683
Effective search space used: 1386742683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)