BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0012.p (239 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yjbJ [M] COG0741 Soluble lytic murein transglycosylase and re... 117 1e-26 BH2852 [M] COG0741 Soluble lytic murein transglycosylase and rel... 117 2e-26 XF0907 [M] COG0741 Soluble lytic murein transglycosylase and rel... 111 1e-24 CAC2677 [M] COG0741 Soluble lytic murein transglycosylase and re... 106 4e-23 BS_yomI_3 [M] COG0741 Soluble lytic murein transglycosylase and ... 103 2e-22 >BS_yjbJ [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Length = 69 Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 0/139 (0%), Positives = 0/139 (0%), Gaps = 16/139 (11%) Query: 96 EITETRPTDY--EELIQSASAKYGVPVDLIKAVIDTESSFNPNVVSSAGAKGLMQLMDGT 153 + + Sbjct: 49 YQKDQAEKEVVD 108 Query: 154 ANGLGVSDPFDPAQSIDGGVRYLSYQLKRYNGQENMALAAYNAGPGRVNKLGVSTDLELL 213 Sbjct: 109 -------- 160 Query: 214 ANLSQLP--KETQAYISKI 230 Sbjct: 161 ---- 175 >BH2852 [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Length = 232 Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/126 (50%), Positives = 78/126 (61%), Gaps = 10/126 (7%) Query: 105 YEELIQSASAKYGVPVDLIKAVIDTESSFNPNVVSSAGAKGLMQLMDGTANGLGVSDPFD 164 + LI +A+ KYGV +LI AVI ES+FNP S AGA GLMQLM TA L V++ FD Sbjct: 110 FRPLINAAAKKYGVDPNLIYAVIKHESNFNPLAKSRAGASGLMQLMPATARQLNVNNMFD 169 Query: 165 PAQSIDGGVRYLSYQLKRYNGQENMALAAYNAGPGRVNKLGVSTDLELLANLSQLPKETQ 224 P Q+IDGG RYL L RY+G +ALAAYNAGPG V+K G KETQ Sbjct: 170 PQQNIDGGTRYLKQMLDRYDGNIQLALAAYNAGPGNVDKYGGIPPF----------KETQ 219 Query: 225 AYISKI 230 Y+ ++ Sbjct: 220 HYVPRV 225 >XF0907 [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Length = 297 Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 14/137 (10%) Query: 103 TDYEELIQSASAKYGVPVDLIKAVIDTESSFNPNVVSSAGAKGLMQLMDGTANGLGVSDP 162 + Y I SA+ ++GV L++A+I ESS+NP +SSAGA+GLMQLM GTA GV+D Sbjct: 164 SAYHGEIVSAAGQFGVEEALVRAIIHAESSYNPLSLSSAGAQGLMQLMPGTARRFGVTDS 223 Query: 163 FDPAQSIDGGVRYLSYQLKRYNGQENMALAAYNAGPGRVNKLGVSTDLELLANLSQLP-- 220 +DP Q+I GGV+YL++ LKR+NG +A A YNAG G V++ G +P Sbjct: 224 YDPLQNIRGGVQYLAWLLKRFNGNLTLAAAGYNAGEGAVDRYG------------GVPPY 271 Query: 221 KETQAYISKIERARAKY 237 ETQ Y+ ++ +Y Sbjct: 272 SETQRYVERVNVLLGRY 288 >CAC2677 [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Length = 237 Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 9/125 (7%) Query: 106 EELIQSASAKYGVPVDLIKAVIDTESSFNPNVVSSAGAKGLMQLMDGTANGLGVSDPFDP 165 ++ + AS KYGV LI +VI ES F+PN S GA+GLMQLM TA LGV++P+D Sbjct: 116 DQAVDEASKKYGVDKKLIMSVIQQESGFDPNATSGVGAEGLMQLMPSTARELGVTNPYDV 175 Query: 166 AQSIDGGVRYLSYQLKRYNGQENMALAAYNAGPGRVNKLGVSTDLELLANLSQLPKETQA 225 Q+IDGG +YL L ++ + +A+AAYNAGPG V + N+ LP ET+ Sbjct: 176 QQNIDGGTKYLKQLLNNFSDMK-LAVAAYNAGPGAVQRSN--------GNIGSLPSETRN 226 Query: 226 YISKI 230 Y+SK+ Sbjct: 227 YVSKV 231 >BS_yomI_3 [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Length = 240 Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/128 (47%), Positives = 75/128 (58%), Gaps = 14/128 (10%) Query: 105 YEELIQSASAKYGVPVDLIKAVIDTESSFNPNVVSSAGAKGLMQLMDGTANGLGVSDPFD 164 Y I SA++KY V LI AVI ES FN S GA GLMQLM TA LGV++ +D Sbjct: 112 YSSYINSAASKYNVDPALIAAVIQQESGFNAKARSGVGAMGLMQLMPATAKSLGVNNAYD 171 Query: 165 PAQSIDGGVRYLSYQLKRYNGQENMALAAYNAGPGRVNKLGVSTDLELLANLSQLP--KE 222 P Q++ GG +YL+ QL+++ G ALAAYNAGPG V K G +P KE Sbjct: 172 PYQNVMGGTKYLAQQLEKFGGNVEKALAAYNAGPGNVIKYG------------GIPPFKE 219 Query: 223 TQAYISKI 230 TQ Y+ KI Sbjct: 220 TQNYVKKI 227 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.310 0.128 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,183,150 Number of extensions: 506799 Number of successful extensions: 929 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 896 Number of HSP's successfully gapped: 70 Length of query: 239 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 136 Effective length of database: 26,499,029 Effective search space: 3603867944 Effective search space used: 3603867944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 114 (48.5 bits)