BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0008.p (215 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yjbE [P] COG0861 Membrane protein TerC, possibly involved in ... 134 1e-31 BH2860 [P] COG0861 Membrane protein TerC, possibly involved in t... 104 8e-23 CAC1039 [P] COG0861 Membrane protein TerC, possibly involved in ... 94 1e-19 RSc0949 [P] COG0861 Membrane protein TerC, possibly involved in ... 86 5e-17 PA1170 [P] COG0861 Membrane protein TerC, possibly involved in t... 82 8e-16 >BS_yjbE [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance Length = 80 Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 0/169 (0%), Positives = 0/169 (0%) Query: 9 INLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVPYIEAGG 68 V A + A Sbjct: 15 AATSAWAAPVQVGEAAGSAATSVSAGSSSATSVSTVSSAVGVALAATGGGDGSNTGTTTT 74 Query: 69 GIXXXXXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGVAKGDLALV 128 Sbjct: 75 134 Query: 129 VIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDAK 177 Sbjct: 135 183 >BH2860 [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance Length = 223 Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 93/171 (54%) Query: 5 EILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVPYI 64 I+ I+L+L GDNA+V+A+A ++LP+Q LLT AV LL++P++ Sbjct: 12 TIIGIDLILGGDNAIVVALACRHLPKQQRNKAIMIGIGLALLVRVLLTMVAVQLLEIPFL 71 Query: 65 EAGGGIXXXXXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGVAKGD 124 GG + +++ I++AD VM DNVLAIAG + G+ Sbjct: 72 LGIGGALLIYIAFQLLVDNNSEQEISTGPTLGSAIKAIVIADCVMGFDNVLAIAGASHGN 131 Query: 125 LALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQD 175 LV+ G+ +S+PI++WGS +I+ P++ YIGA ILA+TA M+ + Sbjct: 132 PILVITGLLISVPIIIWGSKLILVLFDTFPIIVYIGAGILAFTASRMITHE 182 >CAC1039 [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance Length = 239 Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 8/177 (4%) Query: 5 EILMINLVLSGDNAMVIAMASKNLPE----QHXXXXXXXXXXXXXXXXCLLTFAAVLLLK 60 +I ++++VLSGDN VIA+A+K+LP+ + CL+T+ +L+++ Sbjct: 13 QITLLDVVLSGDNIGVIALATKDLPKTLAKKASFIGVVAAVTLRIIFACLITY--ILMIQ 70 Query: 61 VPYIEAGGGIXXXXXX--XXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIA 118 I+ GGI + ++++I+LADF MSLDNVLAIA Sbjct: 71 WLPIKLVGGIILVKITWDFIKPHEESSNKAVHNSKKMLAAIQSIILADFTMSLDNVLAIA 130 Query: 119 GVAKGDLALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQD 175 AKG + L+V G+ L+IPI+ WGS + + + + ++ YIG ILA+TA M+ +D Sbjct: 131 AAAKGHIGLIVFGLILNIPIIFWGSQYVATLMKKYKIVIYIGGAILAHTAFSMIFED 187 >RSc0949 [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance Length = 230 Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 2/175 (1%) Query: 3 LGEILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVP 62 L I++I+LVL+GDNA++IA+A++NLP L+T A V LLK+P Sbjct: 16 LASIIVIDLVLAGDNAILIALAARNLPPDLQKKAILWGAAGAIIVRALMTLAVVWLLKIP 75 Query: 63 YIEAGGGIXXXXXXXXXXXXXXXX--XXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGV 120 + GG+ + +++TI++AD VM +DNVLAIAG Sbjct: 76 GLMLVGGLALVWIAWKLLADDDQDDGAHGTASHTLLGAMKTIIIADAVMGIDNVLAIAGA 135 Query: 121 AKGDLALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQD 175 + G LVV+G+ +S+P+VVWGSG+++ + R P++ Y GA +LAYTA M++ + Sbjct: 136 SHGSFLLVVLGLLVSVPVVVWGSGVVLRLIERFPIIIYGGAAVLAYTAAHMIVAE 190 >PA1170 [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance Length = 244 Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 1/173 (0%) Query: 5 EILMINLVLSGDNAMVIAMASKNLPEQHXXXXXXXXXXXXXXXXCLLTFAAVLLLKVPYI 64 +I+ I+++L GDNA+VIA+A ++LP LL F A+ LL +PY+ Sbjct: 16 QIVAIDILLGGDNAVVIALACRHLPAHRRKQAIFGGVAGAILIRILLLFFALHLLDLPYL 75 Query: 65 EAGGGIXXX-XXXXXXXXXXXXXXXXXXXXXVWKSVRTILLADFVMSLDNVLAIAGVAKG 123 + G + + +++TI++AD VMSLDNV+A++ + G Sbjct: 76 KVIGALLLLWIGIKLLLPEEENGDDIKGSTHLLGAIKTIIIADAVMSLDNVIALSAASAG 135 Query: 124 DLALVVIGIALSIPIVVWGSGIIVSWLHRLPVLTYIGAYILAYTAGDMLLQDA 176 D LV +G+ +SIPI+VWGS +I+ + R P++ G +L + AG MLL D+ Sbjct: 136 DFFLVSLGVLISIPIIVWGSQLILRLIDRFPLIILFGGGLLGWIAGGMLLTDS 188 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.142 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,261,155 Number of extensions: 327767 Number of successful extensions: 2381 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 2370 Number of HSP's successfully gapped: 10 Length of query: 215 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 113 Effective length of database: 26,614,363 Effective search space: 3007423019 Effective search space used: 3007423019 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 113 (48.1 bits)