BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0003.p (269 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2960 [M] COG1087 UDP-glucose 4-epimerase 337 2e-92 CAC1429 [M] COG1087 UDP-glucose 4-epimerase 330 2e-90 FN2109 [M] COG1087 UDP-glucose 4-epimerase 315 4e-86 all4713 [M] COG1087 UDP-glucose 4-epimerase 284 1e-76 SMb20459 [M] COG1087 UDP-glucose 4-epimerase 255 4e-68 >CAC2960 [M] COG1087 UDP-glucose 4-epimerase Length = 329 Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 158/243 (65%), Positives = 191/243 (78%), Gaps = 1/243 (0%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREAL-LGGKLYEGDLRDKVTLNK 59 M+ILV GGAGYIGSHTV EL+E G+EVV++DNL +GH +A+ K Y+GD+RD L+K Sbjct: 1 MSILVCGGAGYIGSHTVHELIESGKEVVIVDNLQSGHLQAVNKKAKFYKGDIRDSEFLDK 60 Query: 60 LFSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAAT 119 +FSENKI ++IHFAA+SLVGESM+ P+ Y++NNVYG Q LLE+M + + IVFSSTAA Sbjct: 61 VFSENKIQSIIHFAANSLVGESMEKPLLYFNNNVYGMQILLESMVKHNIKNIVFSSTAAV 120 Query: 120 YGEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKI 179 YGEP+K+PI E+D T P N YGETKLTME+MM W K GI YVALRYFN AGA G I Sbjct: 121 YGEPKKIPILESDDTNPTNTYGETKLTMEKMMKWSSKAYGINYVALRYFNVAGALDDGSI 180 Query: 180 GEDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYL 239 GEDH PE+HLIPL+LQ LK+R I VFG DYPT DGTC+RDYIHV DLA AH++AV YL Sbjct: 181 GEDHNPETHLIPLILQVPLKKRPFITVFGTDYPTPDGTCIRDYIHVIDLAAAHIKAVEYL 240 Query: 240 RSG 242 +G Sbjct: 241 ENG 243 >CAC1429 [M] COG1087 UDP-glucose 4-epimerase Length = 327 Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 155/242 (64%), Positives = 189/242 (78%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKL 60 M +LV GGAGYIGSH A LLE G VV++DNL TGH+E++L KLY GDLRD+ LNK+ Sbjct: 1 MNVLVCGGAGYIGSHMAAYLLENGHNVVIVDNLTTGHKESILNNKLYVGDLRDEDFLNKV 60 Query: 61 FSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATY 120 F ENKIDAVI FAA+SLVGES+ +P+KY+DNN+ LLEAM+ V IVFSSTAATY Sbjct: 61 FDENKIDAVIDFAANSLVGESVANPLKYFDNNIQSVVKLLEAMKNHDVKYIVFSSTAATY 120 Query: 121 GEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIG 180 GEP+ +PI E D+T P N YGE+KL +E+++ W D GIKY ALRYFNA GAH SG IG Sbjct: 121 GEPDNIPILEGDKTFPTNPYGESKLAVEKILKWCDNAYGIKYTALRYFNACGAHISGNIG 180 Query: 181 EDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLR 240 EDH PE+HLIPL+LQ AL +R+ I ++GDDY TEDGTCVRDY+HVSDLA AH+ A+ L+ Sbjct: 181 EDHNPETHLIPLILQVALGKRDKIMIYGDDYDTEDGTCVRDYVHVSDLASAHLLALERLK 240 Query: 241 SG 242 +G Sbjct: 241 NG 242 >FN2109 [M] COG1087 UDP-glucose 4-epimerase Length = 329 Score = 315 bits (808), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 153/243 (62%), Positives = 189/243 (77%), Gaps = 1/243 (0%) Query: 1 MAILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREAL-LGGKLYEGDLRDKVTLNK 59 M+ILV GGAGYIGSH V LLE+ E+VVV+D+L+TGH +A+ L GDL+D+ LN+ Sbjct: 1 MSILVCGGAGYIGSHVVKYLLEKNEDVVVVDSLITGHIDAVDEKAHLELGDLKDEEFLNR 60 Query: 60 LFSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAAT 119 +F + +ID VI FAA SLVGES+ +P+KY++NN YGT CLL+ M+ VDKIVFSSTAAT Sbjct: 61 VFEKYQIDGVIDFAAFSLVGESVGEPLKYFENNFYGTLCLLKVMKNNNVDKIVFSSTAAT 120 Query: 120 YGEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKI 179 YGE E +PI ETDRTEP N YGE+KL +E+M W G+KY ALRYFN AGA+ SG+I Sbjct: 121 YGEAENMPILETDRTEPTNPYGESKLAVEKMFKWCANAYGLKYTALRYFNVAGAYPSGEI 180 Query: 180 GEDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYL 239 GE H E+HLIPL+LQ AL QRE I+++GDDYPT DGTC+RDYIHV DLADAH A+N L Sbjct: 181 GEAHTCETHLIPLILQVALGQREKISIYGDDYPTPDGTCIRDYIHVMDLADAHYLALNRL 240 Query: 240 RSG 242 R+G Sbjct: 241 RNG 243 >all4713 [M] COG1087 UDP-glucose 4-epimerase Length = 332 Score = 284 bits (726), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 143/244 (58%), Positives = 175/244 (71%), Gaps = 3/244 (1%) Query: 2 AILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHR---EALLGGKLYEGDLRDKVTLN 58 +ILVTGGAGYIGSHTV L + G +VV++DNL+ GHR E +L +L GD D+ L+ Sbjct: 7 SILVTGGAGYIGSHTVLALKQAGYDVVILDNLVYGHRDLVEKVLQVELVVGDTGDRPLLD 66 Query: 59 KLFSENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAA 118 +LF DAV+HF+A + VGES+ DP KYY NNV GT LLEAM A ++K VFSST A Sbjct: 67 ELFKSRHFDAVMHFSAYAYVGESVSDPAKYYRNNVLGTLTLLEAMLAASINKFVFSSTCA 126 Query: 119 TYGEPEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGK 178 TYG P+ VPI E P N YG TKL +ER++A FD G+K V RYFNAAGA+ G Sbjct: 127 TYGVPKTVPIPEDHPQNPINPYGATKLMVERILADFDVAYGLKSVRFRYFNAAGANPDGL 186 Query: 179 IGEDHRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNY 238 +GEDH PE+HLIPLVL TAL +R+ I++FG DYPT DGTC+RDYIHV+DLADAHV + Y Sbjct: 187 LGEDHNPETHLIPLVLLTALGKRKFISIFGTDYPTPDGTCIRDYIHVNDLADAHVLGLKY 246 Query: 239 LRSG 242 L G Sbjct: 247 LLKG 250 >SMb20459 [M] COG1087 UDP-glucose 4-epimerase Length = 328 Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 130/240 (54%), Positives = 161/240 (67%) Query: 3 ILVTGGAGYIGSHTVAELLERGEEVVVIDNLLTGHREALLGGKLYEGDLRDKVTLNKLFS 62 ILVTGGAGYIGSHT L G E VV DNL TG+R A+ G +GD+ D L ++ Sbjct: 6 ILVTGGAGYIGSHTAKLLRLEGIEPVVYDNLTTGNRSAVRWGPFVQGDILDGRRLIEVIE 65 Query: 63 ENKIDAVIHFAASSLVGESMKDPVKYYDNNVYGTQCLLEAMQQAGVDKIVFSSTAATYGE 122 ++ DAVIHFAAS+ VGES+ DP KYY+NNV GT LL+A +Q GVDK++FSS+ ATYG Sbjct: 66 AHQPDAVIHFAASAYVGESVADPAKYYNNNVRGTLSLLDACRQTGVDKVIFSSSCATYGV 125 Query: 123 PEKVPIEETDRTEPANVYGETKLTMERMMAWFDKVLGIKYVALRYFNAAGAHASGKIGED 182 P +PI+E P N YG+TKL E M+A + + YV+LRYFNA GA G +GE Sbjct: 126 PAVLPIDEATPQAPINPYGKTKLVAEHMLADYAAAFALNYVSLRYFNACGADPEGDLGEW 185 Query: 183 HRPESHLIPLVLQTALKQRESIAVFGDDYPTEDGTCVRDYIHVSDLADAHVRAVNYLRSG 242 H PE+HLIP L A + + +FG+DY T DGTCVRDYIHV+DLA AHV A +L G Sbjct: 186 HDPETHLIPRALMAAAGRIPHLEIFGEDYDTPDGTCVRDYIHVADLASAHVLAYRHLAKG 245 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,967,652 Number of extensions: 796070 Number of successful extensions: 3414 Number of sequences better than 1.0e-05: 190 Number of HSP's gapped: 3195 Number of HSP's successfully gapped: 190 Length of query: 269 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 164 Effective length of database: 26,268,361 Effective search space: 4308011204 Effective search space used: 4308011204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)