BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0171.0002.p
         (53 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2960 [M] COG1087 UDP-glucose 4-epimerase                            74   5e-14
CAC1429 [M] COG1087 UDP-glucose 4-epimerase                            67   4e-12
FN2109 [M] COG1087 UDP-glucose 4-epimerase                             66   1e-11
SMb20942 [M] COG1087 UDP-glucose 4-epimerase                           60   6e-10
all4713 [M] COG1087 UDP-glucose 4-epimerase                            58   4e-09

>CAC2960 [M] COG1087 UDP-glucose 4-epimerase
          Length = 329

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 1   VIQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           V+ ERR+GDPA LVASS KA+ VLGW+P+  +V+DII+ AW WH  +P G+
Sbjct: 277 VLGERRSGDPAQLVASSQKAKEVLGWSPKFTNVKDIIKDAWKWHETHPNGF 327


>CAC1429 [M] COG1087 UDP-glucose 4-epimerase
          Length = 327

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 35/50 (70%)

Query: 2   IQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           I ERRAGDP  L+ASSD+A   LGW P+   +E II++AW WH  +P GY
Sbjct: 277 IGERRAGDPGTLIASSDRAILELGWKPKFNSLETIIETAWKWHKNHPNGY 326


>FN2109 [M] COG1087 UDP-glucose 4-epimerase
          Length = 329

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 2   IQERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQGY 51
           +  RRAGDPA L+ASS KA   L W P++  +E II++AWNWH  +P GY
Sbjct: 278 VSPRRAGDPARLIASSKKAIDELKWKPKYDKLEQIIETAWNWHKNHPNGY 327


>SMb20942 [M] COG1087 UDP-glucose 4-epimerase
          Length = 328

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4   ERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQG 50
           ERR GD   LVA++DKAR VLGW PQ+ D+  I +SAWNWHS   QG
Sbjct: 282 ERREGDSTTLVANNDKARQVLGWEPQY-DLAAITESAWNWHSRRNQG 327


>all4713 [M] COG1087 UDP-glucose 4-epimerase
          Length = 332

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 4   ERRAGDPAVLVASSDKARSVLGWNPQHADVEDIIQSAWNWHSANPQ 49
           +RR GDP  L+ S +KAR +LGW PQ++ ++DI+  AW WH    Q
Sbjct: 287 DRRPGDPPSLIGSGEKARKILGWQPQYSSIKDIVSHAWQWHQKRHQ 332


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.128    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,237,598
Number of extensions: 123442
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 14
Length of query: 53
Length of database: 38,378,431
Length adjustment: 26
Effective length of query: 27
Effective length of database: 35,379,747
Effective search space: 955253169
Effective search space used: 955253169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)