BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0171.0001.p
         (526 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1852 [G] COG4468 Galactose-1-phosphate uridyltransferase            436   e-122
SP1829 [G] COG4468 Galactose-1-phosphate uridyltransferase            418   e-117

>SP1852 [G] COG4468 Galactose-1-phosphate uridyltransferase
          Length = 493

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/442 (48%), Positives = 297/442 (67%), Gaps = 16/442 (3%)

Query: 84  ENTDTYRDLLDAKIMGLLMARPSEVNAEFYRLSAEKGIEAATDRFYKLSIDSNYIRMDRI 143
           E++ T R++L A++M L+   PS+VN +F+   A    E A + FY+LS  ++YI++  I
Sbjct: 65  EDSQTAREILGAELMDLVTPCPSQVNRDFWATYAHSP-EQAIEDFYQLSQKNDYIKLKAI 123

Query: 144 SKNVFWLQDSPYGDIEMTINLSKPEKNPKEIAMARLLPPPVYPKCLLCRENVGYAGRLNH 203
           ++N+ +   S YG++E+TINLSKPEK+PKEI  A+L+    YP+C LC EN GY GR+NH
Sbjct: 124 ARNIAYRVPSDYGELEITINLSKPEKDPKEIVAAKLVQASNYPQCQLCLENEGYHGRVNH 183

Query: 204 PPRQNLRVIPLKLNNENWFLQYSPYVYYNEHCIVFHHDHVPMKLTKDSLKRLLSFVEAFP 263
           P R N R+I  ++  + W  QYSPY Y+NEHCI     H PM +++ S +RLL+ V+ FP
Sbjct: 184 PARSNHRIIRFEMVGQEWGFQYSPYAYFNEHCIFLDGQHRPMAISRQSFERLLAIVDQFP 243

Query: 264 HYFIGSNADLPIVGGSILTHDHFQGGRHTFPIQKAPKEITFTHAAYPGVSLSIVKWPMSV 323
            YF GSNADLPIVGGSILTHDH+QGGRH FP++ AP +  F  A +  V   IVKWPMSV
Sbjct: 244 GYFAGSNADLPIVGGSILTHDHYQGGRHVFPMELAPLQKAFRFAGFEQVKAGIVKWPMSV 303

Query: 324 LRLQGADPAVLLECGNEIYEAWKVYSDPEAEILAASEVDGEQTRHNTVTPIVRRSEDGGF 383
           LRL       L+   ++I + W+ YSDP  +ILA +    ++T H+T+TPI R+  DG F
Sbjct: 304 LRLTSDSKEDLINLADKILQEWRQYSDPAVQILAET----DRTPHHTITPIARK-RDGQF 358

Query: 384 EMDLVLRNNRTSEEHPEGIFHPHREMHHIKKENIGLIEVMGLAILPGRLKEELDAVGGIL 443
           E+DLVLR+N+TS E+P+GI+HPH+++ HIKKENIGLIEVMGLAILP RLKEE++ V   L
Sbjct: 359 ELDLVLRDNQTSAEYPDGIYHPHKDVQHIKKENIGLIEVMGLAILPPRLKEEVEQVASYL 418

Query: 444 AGDTALLEAVQSQADHALAQHASWIQELAARFGTAMEREEAVKAVQNEVGIKFTHILEHA 503
            G+   +      AD+    H  W  +L ++     ++E+A+  V++ VG  F  +LE A
Sbjct: 419 VGEAVTV------ADY----HQEWADQLKSQHPDLTDKEKALAIVKDSVGAIFARVLEDA 468

Query: 504 GVYKRTPEGQAAFRRFAHSLGF 525
           GVYK+T +GQ AF RF   +G 
Sbjct: 469 GVYKQTEQGQTAFMRFVEQVGI 490


>SP1829 [G] COG4468 Galactose-1-phosphate uridyltransferase
          Length = 491

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/457 (46%), Positives = 296/457 (64%), Gaps = 20/457 (4%)

Query: 70  DVLIDYGFETGLIPENTDTYRDLLDAKIMGLLMARPSEVNAEFYRLSAEKGIEAATDRFY 129
           D L++   + G I +  +  ++ L A++M  ++  PS +N  F+  S +   + A + FY
Sbjct: 53  DYLVEIALKNGKIKDLIEE-KECLGAELMNFIVPLPSRLNDIFWS-SYDISPQEAVEEFY 110

Query: 130 KLSIDSNYIRMDRISKNVFWLQDSPYGDIEMTINLSKPEKNPKEIAMARLLPPPVYPKCL 189
           KLS DS+YI+   I+KN+ +   + YG++E+TINLSKPEK+PK IA  +L+    YPKCL
Sbjct: 111 KLSKDSDYIKTSAIAKNIEFRASTKYGELEITINLSKPEKDPKTIAAEKLVKATNYPKCL 170

Query: 190 LCRENVGYAGRLNHPPRQNLRVIPLKLNNENWFLQYSPYVYYNEHCIVFHHDHVPMKLTK 249
           LC EN GY GR+N+P R N R+I LKL +E W  QYSPY Y+NEH I  +  HVPM +T 
Sbjct: 171 LCMENEGYQGRINYPARSNHRIIRLKLGDEVWGFQYSPYSYFNEHAIFLNSQHVPMAITS 230

Query: 250 DSLKRLLSFVEAFPHYFIGSNADLPIVGGSILTHDHFQGGRHTFPIQKAPKEITFTHAAY 309
            + ++LL  V+  P YF GSN+DLPI GGSIL+H+H+QGG+H FP++KA  E  F    +
Sbjct: 231 KTFEQLLEIVDILPGYFAGSNSDLPISGGSILSHNHYQGGKHIFPMEKAKFESEFCFKDF 290

Query: 310 PGVSLSIVKWPMSVLRLQGADPAVLLECGNEIYEAWKVYSDPEAEILAASEVDGEQTRHN 369
             V+  IVKWPMSV+RLQ  +   LL+   +I   W+ YSD E +I+A +    E   H+
Sbjct: 291 EDVNAGIVKWPMSVIRLQSENKNRLLDLATKILNKWREYSDLEVDIIAMT----EDVPHH 346

Query: 370 TVTPIVRRSEDGGFEMDLVLRNNRTSEEHPEGIFHPHREMHHIKKENIGLIEVMGLAILP 429
           TVTPI R+  DG +E+D+VLR+N T+E++P+G+FHPH+++ HIKKENIGLIEVMGLAILP
Sbjct: 347 TVTPIARKV-DGRYELDIVLRDNHTTEQYPDGVFHPHQDVQHIKKENIGLIEVMGLAILP 405

Query: 430 GRLKEELDAVGGILAGDTALLEAVQSQADHALAQ-HASWIQELAARFGTAMEREEAVKAV 488
            RLK EL+ VG  L G+           D+A+A  H  W  +L  ++   + +EE    V
Sbjct: 406 PRLKPELEEVGKYLLGE-----------DNAIADYHLEWADQLKEKY-PRINKEEVNSVV 453

Query: 489 QNEVGIKFTHILEHAGVYKRTPEGQAAFRRFAHSLGF 525
           Q+E G  F  +LE AGVYK TP G  AF RF  S+G 
Sbjct: 454 QHEAGQVFARVLEDAGVYKNTPSGHEAFMRFVKSVGI 490


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 40,640,230
Number of extensions: 1741141
Number of successful extensions: 4495
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4489
Number of HSP's successfully gapped: 2
Length of query: 526
Length of database: 38,378,431
Length adjustment: 111
Effective length of query: 415
Effective length of database: 25,576,357
Effective search space: 10614188155
Effective search space used: 10614188155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 118 (50.1 bits)