BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0023.p (360 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1198 [M] COG0791 Cell wall-associated hydrolases (invasion-ass... 74 5e-13 XF0653 [M] COG0791 Cell wall-associated hydrolases (invasion-ass... 61 3e-09 PA1199 [M] COG0791 Cell wall-associated hydrolases (invasion-ass... 60 4e-09 RSc1177 [M] COG0791 Cell wall-associated hydrolases (invasion-as... 59 1e-08 NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-as... 56 8e-08 >PA1198 [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Length = 205 Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 19/129 (14%) Query: 220 SVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQNST 279 S++ +GTPY FG + + FDCS F+ +F + A +KLP +R+ I + Sbjct: 72 SILERAFELIGTPYRFGGTTA--KGFDCSGFVGYLFREEAGIKLPRSTRE---LIDMDVP 126 Query: 280 VVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVASGGV 339 +V+ L+ GDL+FF + + R++H +Y+GDGQ + + S GGV Sbjct: 127 LVSK-DELQPGDLLFFNN-------------RGRGRVSHAGIYIGDGQFIHSASRRGGGV 172 Query: 340 RVDKLSASW 348 RVD L +S+ Sbjct: 173 RVDSLDSSY 181 >XF0653 [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Length = 212 Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 30/145 (20%) Query: 221 VIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQ----QGDWIKQ 276 V+ + +GTPY FG + + S FDCS + ++ DA +L+LP S + QG I Sbjct: 93 VVMRALSLVGTPYRFGGNTPE-SGFDCSGLVSYVYRDALDLRLPRTSYELAAVQGPKI-- 149 Query: 277 NSTVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVAS 336 D L GDL+FF GS+ S +THV +YL +G+ + S + Sbjct: 150 ------DAEQLTTGDLVFF----GSARS-----------VTHVGIYLSEGRFVHAPS-SG 187 Query: 337 GGVRVDKLSAS-WMKRFLYGGSVIR 360 G VR+D+L W + V+R Sbjct: 188 GTVRLDRLDTPYWRDHYTGAKRVLR 212 >PA1199 [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Length = 177 Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 19/133 (14%) Query: 219 ESVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQNS 278 + V+ +G +GTPY +G + D S FDCS I ++ D +KLP +R+ I + Sbjct: 45 DDVLFRALGLVGTPYRWGGNTPD-SGFDCSGLINFVYRDMTGIKLPRSTREM---ISMRA 100 Query: 279 TVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVASGG 338 V + L+ GDL+FF G + ++H +Y+G+G+ + G Sbjct: 101 PSV-PVQALQTGDLVFFATSGGRT-------------VSHAGIYVGEGRFVHAPRTG-GT 145 Query: 339 VRVDKLSASWMKR 351 VR+D L S+ +R Sbjct: 146 VRLDSLQNSYWQR 158 >RSc1177 [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Length = 222 Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 22/133 (16%) Query: 221 VIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQNSTV 280 V+ +G +G Y FG + + S DCS F+R +F D LP R+ + + ++V Sbjct: 69 VVMNALGMIGLRYRFGGNTPE-SGLDCSGFVRYVFHDTFGFLLP---RRAVEMSRVGTSV 124 Query: 281 VTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQTYSVASGGVR 340 D+ L+ GDL+FF + +HVA+Y+GD +++ S S +R Sbjct: 125 --DMKDLRPGDLVFF--------------NTMHRTFSHVAIYVGDNKMVHAPSTGS-KIR 167 Query: 341 VDKLSAS-WMKRF 352 VD ++AS W+ R+ Sbjct: 168 VDDMTASYWVSRY 180 >NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Length = 171 Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 0/112 (0%), Positives = 0/112 (0%), Gaps = 19/112 (16%) Query: 219 ESVIAAGMGYLGTPYEFGSSRSDTSTFDCSDFIRQIFMDAANLKLPADSRQQGDWIKQNS 278 + + + + + Sbjct: 150 FYTLNSEVEEGYSGVYQNEN---- 205 Query: 279 TVVTDISGLKRGDLMFFMDYKGSSDSAYAGIDKSTARITHVAMYLGDGQLLQ 330 Sbjct: 206 --------------- 242 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.131 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,319,207 Number of extensions: 767360 Number of successful extensions: 1596 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 1607 Number of HSP's successfully gapped: 20 Length of query: 360 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 252 Effective length of database: 25,922,359 Effective search space: 6532434468 Effective search space used: 6532434468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)