BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0005.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2021 [G] COG3833 ABC-type maltose transport systems, permease ... 251 9e-67 YPO0854 [G] COG3833 ABC-type maltose transport systems, permease... 236 3e-62 BH2924 [G] COG3833 ABC-type maltose transport systems, permease ... 236 3e-62 BS_yvfM [G] COG3833 ABC-type maltose transport systems, permease... 226 3e-59 SPy1296 [G] COG3833 ABC-type maltose transport systems, permease... 212 4e-55 >BH2021 [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 251 bits (641), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 122/254 (48%), Positives = 164/254 (64%), Gaps = 3/254 (1%) Query: 28 PAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQELFE---QTKYLQWFLNTLKVXXXXXXX 84 P W V +SF GNSL S ++IP +L+HYQELF +Y+QW+ N+LK+ Sbjct: 30 PLLWTVGASFNPGNSLISTSIIPENPSLIHYQELFAGKGSLQYVQWYKNSLKISLFTMVG 89 Query: 85 XXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFPGFMAMIAIYVLLNTLGLLNSHWALVL 144 YA SR+RF GRK LT FL+LQM P F A+IA++VL LGL+NSHW L++ Sbjct: 90 TMISVSFTAYAFSRFRFKGRKHGLTLFLLLQMIPQFSALIALFVLAQMLGLMNSHWLLIM 149 Query: 145 VYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGASHMKVFLSIMMPLSKPMLTYASLMIF 204 +Y G I N ++ KG+ D+IP L+++ARIDGASH ++FL I+MPLSKPML ++ F Sbjct: 150 LYIGGLIPMNTYLMKGYMDSIPIDLDESARIDGASHTRIFLQIIMPLSKPMLAVVAMNGF 209 Query: 205 NGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSNSTEFTLFAAGAVLVALPVTLLFIFLQ 264 G DFI A ILRT + TL +GLF +VN +T FAAGA+L+++PV +F+ LQ Sbjct: 210 TGPLGDFILASTILRTPDAYTLPIGLFNLVNDVMGASYTKFAAGAILISIPVAFIFVLLQ 269 Query: 265 RFLIDGLTAGAMKG 278 R + GLTAG KG Sbjct: 270 RHFVSGLTAGGTKG 283 >YPO0854 [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 112/252 (44%), Positives = 165/252 (65%), Gaps = 1/252 (0%) Query: 28 PAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQELFE-QTKYLQWFLNTLKVXXXXXXXXX 86 P W V +S GNSL S ++IP ++ HY +LF + Y+ W+ N++K+ Sbjct: 32 PLIWTVGASLNAGNSLLSTSIIPENLSFQHYADLFNGEVNYMTWYWNSMKISFLTMVLTL 91 Query: 87 XXXXXXXYAISRYRFAGRKSMLTAFLVLQMFPGFMAMIAIYVLLNTLGLLNSHWALVLVY 146 YA SR+RF GR++ L FL+LQM P F A+IAI+VL LGL+NSH ALVL+Y Sbjct: 92 ISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVLIY 151 Query: 147 SSGSIITNVFVAKGFFDTIPKSLEDAARIDGASHMKVFLSIMMPLSKPMLTYASLMIFNG 206 +G I N ++ KG+ D IPK L+++AR+DGAS+ ++F+ I+MPLSKP++ +L F G Sbjct: 152 VAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSFTG 211 Query: 207 CFVDFIFADLILRTEEKRTLAVGLFRMVNQSNSTEFTLFAAGAVLVALPVTLLFIFLQRF 266 DFI + ILRT +K TL +GL+ +V Q +T +AAGAVL+A+PV +L++ LQ++ Sbjct: 212 PLGDFILSSTILRTPDKYTLPIGLYNLVAQKMGASYTTYAAGAVLIAVPVAILYLALQKY 271 Query: 267 LIDGLTAGAMKG 278 + GLT+G+ KG Sbjct: 272 FVSGLTSGSTKG 283 >BH2924 [G] COG3833 ABC-type maltose transport systems, permease component Length = 280 Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 125/280 (44%), Positives = 171/280 (61%), Gaps = 2/280 (0%) Query: 1 MNRKPEEAAKTIGSYAXXXXXXXXXXXPAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQE 60 MN+K + + Y P W V S G SLFS +IP ++ HY+ Sbjct: 1 MNKKVKSRLEVTAIYLFLLVMGIVILYPLLWTVGLSLNPGTSLFSSRMIPETISFRHYEW 60 Query: 61 LF--EQTKYLQWFLNTLKVXXXXXXXXXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFP 118 LF ++ YLQW+ NTL V YA SRYRF GR L FL+LQMFP Sbjct: 61 LFFDPRSNYLQWYKNTLIVASVTSVCSTFLVALTAYAFSRYRFVGRTYGLYGFLLLQMFP 120 Query: 119 GFMAMIAIYVLLNTLGLLNSHWALVLVYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGA 178 MAM+A+Y+LLNT+ LL++ L+L+Y SI N F+ KG+FDTIP+ L+++A++DGA Sbjct: 121 VLMAMVALYILLNTVNLLDTLLGLILIYVGTSIPMNAFLVKGYFDTIPRELDESAKLDGA 180 Query: 179 SHMKVFLSIMMPLSKPMLTYASLMIFNGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSN 238 H ++F +IM+PL+KP+L +L F F+DFI +ILR+ E TLA+GLF VN Sbjct: 181 GHFRIFFTIMLPLAKPILAVVALFNFMSPFMDFILPRIILRSPENYTLALGLFNFVNDQF 240 Query: 239 STEFTLFAAGAVLVALPVTLLFIFLQRFLIDGLTAGAMKG 278 + FT FAAGA+L+A+P+ +F+FLQR+LI GLT GA KG Sbjct: 241 ANNFTRFAAGAILIAIPIATVFLFLQRYLISGLTTGATKG 280 >BS_yvfM [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 162/254 (63%), Gaps = 3/254 (1%) Query: 28 PAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQELF---EQTKYLQWFLNTLKVXXXXXXX 84 P W +SF GNSL S ++IP+ T HY+ELF E +Y+QW++N++K+ Sbjct: 30 PLLWTAGASFNPGNSLISTSIIPKHPTFDHYKELFAGKESLQYVQWYVNSMKISLFTMAG 89 Query: 85 XXXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFPGFMAMIAIYVLLNTLGLLNSHWALVL 144 YA SR+RF GRK LT FL+LQM P F A+IA++VL LG++NSHW L+L Sbjct: 90 SLLCVTFTAYAFSRFRFKGRKYALTLFLLLQMIPQFSALIALFVLAQILGMINSHWLLIL 149 Query: 145 VYSSGSIITNVFVAKGFFDTIPKSLEDAARIDGASHMKVFLSIMMPLSKPMLTYASLMIF 204 +Y G I N ++ KG+ D+IP L+++A+IDGAS ++F I++PLSKPM ++ F Sbjct: 150 LYIGGLIPMNTYLMKGYMDSIPMDLDESAKIDGASSTRIFFQIILPLSKPMAAVVAMNGF 209 Query: 205 NGCFVDFIFADLILRTEEKRTLAVGLFRMVNQSNSTEFTLFAAGAVLVALPVTLLFIFLQ 264 G DF+ + ILRT E TL VGLF +VN +T FAAGA+L+++PV ++FI LQ Sbjct: 210 TGPLGDFVLSSTILRTPESYTLPVGLFNLVNDVMGASYTTFAAGALLISIPVAVIFIMLQ 269 Query: 265 RFLIDGLTAGAMKG 278 + + GLTAG KG Sbjct: 270 KNFVSGLTAGGTKG 283 >SPy1296 [G] COG3833 ABC-type maltose transport systems, permease component Length = 278 Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 165/254 (64%), Gaps = 5/254 (1%) Query: 28 PAFWIVMSSFKTGNSLFSDTLIPRRMTLVHYQELF--EQTKYLQWFLNTLKVXXXXXXXX 85 P W++++SF++ + + + IP+ TL HY LF E + +WF+NTL V Sbjct: 26 PIAWVILTSFRSEGTAYVNYFIPKTFTLNHYINLFTNETFPFGKWFMNTLIVATFTCIIS 85 Query: 86 XXXXXXXXYAISRYRFAGRKSMLTAFLVLQMFPGFMAMIAIYVLLNTLGLLNSHWALVLV 145 Y++SR +F R L L+L MFPGFM+MIAIY +L LGL + ALVLV Sbjct: 86 TFITVAIAYSLSRIKFKFRNGFLKLALILNMFPGFMSMIAIYYILKALGLTQTLTALVLV 145 Query: 146 YSSGSIITNVFVAKGFFDTIPKSLEDAARIDGASHMKVFLSIMMPLSKPMLTYASLMIFN 205 YSSG+ + ++AKGFFDTIP SL+++A IDGA+ M +F I +PL+KP++ Y +L+ F Sbjct: 146 YSSGAAL-GFYIAKGFFDTIPYSLDESAMIDGATRMDIFFKITLPLAKPIIVYTALLAFM 204 Query: 206 GCFVDFIFADLIL-RTEEKRTLAVGLFRMVNQSN-STEFTLFAAGAVLVALPVTLLFIFL 263 G ++DFIFA +IL K T+A+GLF M+ + F F AG+VL+A+P+TLLF+F+ Sbjct: 205 GPWIDFIFAQVILGDATSKYTVAIGLFSMLQPDTINNWFMAFTAGSVLIAVPITLLFMFM 264 Query: 264 QRFLIDGLTAGAMK 277 Q++ ++G+T G++K Sbjct: 265 QKYYVEGITGGSVK 278 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,650,621 Number of extensions: 511380 Number of successful extensions: 2033 Number of sequences better than 1.0e-05: 162 Number of HSP's gapped: 1839 Number of HSP's successfully gapped: 162 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)