BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0004.p (241 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2208 [R] COG1741 Pirin-related protein 161 7e-40 STM3544 [R] COG1741 Pirin-related protein 158 8e-39 ZyhhW [R] COG1741 Pirin-related protein 156 3e-38 ECs4288 [R] COG1741 Pirin-related protein 156 3e-38 ZyhhW [R] COG1741 Pirin-related protein 156 3e-38 >RSc2208 [R] COG1741 Pirin-related protein Length = 232 Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 136/239 (56%), Gaps = 7/239 (2%) Query: 3 MIKVITSAERHTSNREWIHSEFSFSFADYDDPSNAHFGALLAHNDNELSPGQGMHEHPHH 62 MI++ S ER ++ W+ S SFSFA+Y DP + HFG L N++ ++PG G H H Sbjct: 1 MIEIRPSQERGYADHGWLQSYHSFSFAEYMDPDHVHFGPLRVINEDRVAPGMGFGTHGHR 60 Query: 63 DLEIITYVVSGVLKHQDDLGNHAELQGGSVQVMSAGTGINHSETNPSDSEHVRFLQIWLL 122 D+EII+YV+ G L H+D LGN + L+ G VQ M+AGTG+ HSE N + + FLQIW+L Sbjct: 61 DMEIISYVLDGELAHKDSLGNGSVLRPGDVQRMTAGTGVRHSEFNHAPDQTTHFLQIWVL 120 Query: 123 PDQPGRQPKWDAKFYPAEHKTNTLLPVASGKGEEGALEIHENVTVYLSSLERSRELKYQQ 182 P Q P ++ + + A K L +AS G + ++ +H+++ +Y + + Sbjct: 121 PAQQDLAPGYEERHFEASQKRGRLRLIASADGRDDSVRVHQDMALYAGRFDGAEAATLPL 180 Query: 183 REDRRTHIYLISGHLEIACSDGVFQLEPGDAARIRKSCDLHLKGTGSDSNAEFILIDLP 241 + RR +++++ G +E+ + L GDAA++ + + L G +E ++ DLP Sbjct: 181 ADGRRAYVHVVRGKVEVNGT----PLSGGDAAKLTREPTVTLSGG---EGSEVLVFDLP 232 >STM3544 [R] COG1741 Pirin-related protein Length = 231 Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 138/239 (57%), Gaps = 10/239 (4%) Query: 3 MIKVITSAERHTSNREWIHSEFSFSFADYDDPSNAHFGALLAHNDNELSPGQGMHEHPHH 62 MI + + +R +N W+ S +FSFADY DP+ F AL ND+ + GQG HPH Sbjct: 1 MIYLRKANDRGHANHGWLDSWHTFSFADYYDPNFMGFSALRVINDDVIDAGQGFGTHPHK 60 Query: 63 DLEIITYVVSGVLKHQDDLGNHAELQGGSVQVMSAGTGINHSETNPSDSEHVRFLQIWLL 122 D+EI+TYV+ G ++HQD +GN ++ G Q+MSAGTG+ HSE NPS ++ +R QIW++ Sbjct: 61 DMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHSEYNPSKTDRLRLYQIWII 120 Query: 123 PDQPGRQPKWDAKFYPAEHKTNTLLPVASGKGEEGALEIHENVTVYLSSLERSRELKYQQ 182 P + G P+++ + + A +L S +G+L++H+++ +Y +L + + +Q Sbjct: 121 PQETGITPRYEQRRFDAAQGKQLVL---SPDARDGSLKVHQDMELYRWALLKDEQSVHQI 177 Query: 183 REDRRTHIYLISGHLEIACSDGVFQLEPGDAARIRKSCDLHLKGTGSDSNAEFILIDLP 241 +RR I ++ G++ I + G A ++ +H +DS++E +L DLP Sbjct: 178 AAERRVWIQVVKGNVTINGTKAT--TSDGLAIWDEQAISIH-----ADSDSEVLLFDLP 229 >ZyhhW [R] COG1741 Pirin-related protein Length = 231 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 140/240 (58%), Gaps = 12/240 (5%) Query: 3 MIKVITSAERHTSNREWIHSEFSFSFADYDDPSNAHFGALLAHNDNELSPGQGMHEHPHH 62 MI + + ER +N W+ S +FSFA+Y DP+ F AL ND+ + GQG HPH Sbjct: 1 MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHK 60 Query: 63 DLEIITYVVSGVLKHQDDLGNHAELQGGSVQVMSAGTGINHSETNPSDSEHVRFLQIWLL 122 D+EI+TYV+ G ++HQD +GN ++ G Q+MSAGTGI HSE NPS +E + QIW++ Sbjct: 61 DMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM 120 Query: 123 PDQPGRQPKWDAKFYPAEHKTNTLLPVASGKGEEGALEIHENVTVYLSSLERSRELKYQQ 182 P++ G P+++ + + A +L S +G+L++H+++ +Y +L + + +Q Sbjct: 121 PEENGITPRYEQRRFDAVQGKQLVL---SPDARDGSLKVHQDMELYRWALLKDEQSVHQI 177 Query: 183 REDRRTHIYLISGHLEIACSDGV-FQLEPGDAARIRKSCDLHLKGTGSDSNAEFILIDLP 241 +RR I ++ G++ I +GV G A ++ +H +DS++E +L DLP Sbjct: 178 AAERRVWIQVVKGNVTI---NGVKASTSDGLAIWDEQAISIH-----ADSDSEVLLFDLP 229 >ECs4288 [R] COG1741 Pirin-related protein Length = 231 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 141/240 (58%), Gaps = 12/240 (5%) Query: 3 MIKVITSAERHTSNREWIHSEFSFSFADYDDPSNAHFGALLAHNDNELSPGQGMHEHPHH 62 MI + + ER +N W+ S +FSFA+Y DP+ F AL ND+ + GQG HPH Sbjct: 1 MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHK 60 Query: 63 DLEIITYVVSGVLKHQDDLGNHAELQGGSVQVMSAGTGINHSETNPSDSEHVRFLQIWLL 122 D+EI+TYV+ G ++HQD +GN ++ G Q+MSAGTGI HSE NPS +E + QIW++ Sbjct: 61 DMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM 120 Query: 123 PDQPGRQPKWDAKFYPAEHKTNTLLPVASGKGEEGALEIHENVTVYLSSLERSRELKYQQ 182 P++ G P+++ + + A +L S +G+L++H+++ +Y +L + + +Q Sbjct: 121 PEENGITPRYEQRRFDAVQGKQLVL---SPDARDGSLKVHQDMELYRWALLKDEQSVHQI 177 Query: 183 REDRRTHIYLISGHLEIACSDGV-FQLEPGDAARIRKSCDLHLKGTGSDSNAEFILIDLP 241 +RR I ++ G++ I +GV + G A ++ +H +DS++E +L DLP Sbjct: 178 AAERRVWIQVVKGNVTI---NGVKASISDGLAIWDEQAISIH-----ADSDSEVLLFDLP 229 Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 141/244 (57%), Gaps = 20/244 (8%) Query: 3 MIKVITSAERHTSNREWIHSEFSFSFADYDDPSNAHFGALLAHNDNELSPGQGMHEHPHH 62 MI + + ER +N W+ S +FSFA+Y DP+ F AL ND+ + GQG HPH Sbjct: 1 MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHK 60 Query: 63 DLEIITYVVSGVLKHQDDLGNHAELQGGSVQVMSAGTGINHSETNPSDSEHVRFLQIWLL 122 D+EI+TYV+ G ++HQD +GN ++ G Q+MSAGTGI HSE NPS +E + QIW++ Sbjct: 61 DMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM 120 Query: 123 PDQPGRQPKWDAKFYPAEHKTNTLLPVASGKGEEGALEIHENVTVYLSSLERSRELKYQQ 182 P++ G P+++ + + A +L S +G+L++H+++ +Y +L + + +Q Sbjct: 121 PEENGITPRYEQRRFDAVQGKQLVL---SPDARDGSLKVHQDMELYRWALLKDEQSVHQI 177 Query: 183 REDRRTHIYLISGHLEI-----ACSDGVFQLEPGDAARIRKSCDLHLKGTGSDSNAEFIL 237 +RR I ++ G++ I + SDG+ A ++ +H +DS++E +L Sbjct: 178 AAERRVWIQVVKGNVTINGVKASTSDGL-------AIWDEQAISIH-----ADSDSEVLL 225 Query: 238 IDLP 241 DLP Sbjct: 226 FDLP 229 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,057,092 Number of extensions: 825069 Number of successful extensions: 10640 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 10624 Number of HSP's successfully gapped: 32 Length of query: 241 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 138 Effective length of database: 26,499,029 Effective search space: 3656866002 Effective search space used: 3656866002 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)