BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0025.p
         (278 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0358 [G] COG0726 Predicted xylanase/chitin deacetylase             277   1e-74
VC0239_2 [G] COG0726 Predicted xylanase/chitin deacetylase             53   5e-07
XF0878 [G] COG0726 Predicted xylanase/chitin deacetylase               51   2e-06

>CAC0358 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 266

 Score =  277 bits (709), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 127/266 (47%), Positives = 178/266 (66%), Gaps = 2/266 (0%)

Query: 13  MKIKLDLFPGGVTKALTTSWDDGRIYDRQLVAVLNRHGLKGSFHLNSGFFGKDSYITREE 72
           M      FP G  K LT S+DDG++ D++LV++ N++G+KG+FH+NSG  G  + +T+ E
Sbjct: 1   MNKIFKCFPDGKFKVLTMSYDDGKLSDKKLVSIFNKYGIKGTFHINSGLIGSYNRLTKAE 60

Query: 73  AASLYKGHEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDG 132
             +LY GHE+SAHT THP ++  P E + +E+L DRE+LE+I GYPVRG+SYP G YND 
Sbjct: 61  IKTLYSGHEVSAHTLTHPTIARCPMEQVTKEILMDRENLEEIVGYPVRGLSYPNGSYNDS 120

Query: 133 VLSILPALGIEYSRTVQSHGSFILPDNPLAWHPTCHHR-DMLALGQQFLEEKPKYPRMQL 191
           + ++L  LGIEYSR V +  SF LP +  AW  TCHH  +++   ++F+    K   + +
Sbjct: 121 IRNLLKYLGIEYSRIVGNSDSFDLPSDFTAWKATCHHNHNLMEHAKEFVFLYKK-QYLYM 179

Query: 192 LYVWGHSYEFNDNNNWEELEQFAGMMGGHEDIWYATNIEIVDYLSAVRGLRFSASRSIVY 251
           +YVWGHSYEF+ +NNW  +E F   +   +DIWYATNIEIVDY + +  L+FSA    VY
Sbjct: 180 MYVWGHSYEFDRDNNWHLIENFCSYISNKDDIWYATNIEIVDYKNVLDNLKFSAKSDFVY 239

Query: 252 NPSAVDVWITAEDQVRQIPSGATLQL 277
           NPSA   WIT  D++ +I  G  L+L
Sbjct: 240 NPSAKSAWITVNDEIVEIKGGTQLKL 265


>VC0239_2 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 248

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 81  EISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYNDGVLSILPAL 140
           EI  HT THPFLS        EE+LR++  LE + G P+   +YP+GD++     +   L
Sbjct: 137 EIGGHTMTHPFLSKLSESEQREEILRNKLELEALIGEPLTSFAYPYGDHDATSKQLAQDL 196

Query: 141 GIEYSRTVQSHGSFILPDNP 160
           G  ++    S G  ++  +P
Sbjct: 197 GYPFAVATNS-GPLLMHQDP 215


>XF0878 [G] COG0726 Predicted xylanase/chitin deacetylase
          Length = 257

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 26  KALTTSWDDGRIYDRQL-VAVLNRHGLKGSFHLNSGFFGKDSYITREEAASLY------- 77
           K +  + DDG + + Q  + VL  HG   + ++ SG   + +    E             
Sbjct: 80  KVMVVTLDDGYLDNLQAALPVLQAHGFSATCYVVSGSLARFNTWDAERLNVCKPLMSPAQ 139

Query: 78  ------KGHEISAHTCTHPFLSMTPREGIAEEVLRDREHLEQIAGYPVRGMSYPFGDYND 131
                  G E+ AHT +HP LS      + EE+   R+ LEQ  G PV    YP+GD   
Sbjct: 140 VRQWHDAGMEVGAHTRSHPHLSGCTAAQLHEEIAGCRDDLEQCIGAPVTQFCYPYGDVTP 199

Query: 132 GVLSILPALGIEYSRTVQSHGSF------ILPDNPLAW 163
            V+  +   G   + T +    F       LP  P+++
Sbjct: 200 PVIDAVCDAGYAAATTTRRGRVFPGQHLWTLPRVPVSY 237


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 22,085,024
Number of extensions: 942640
Number of successful extensions: 1253
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1257
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 173
Effective length of database: 26,268,361
Effective search space: 4544426453
Effective search space used: 4544426453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)