BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0023.p (288 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 95 1e-19 CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 81 2e-15 mll0736 [K] COG2207 AraC-type DNA-binding domain-containing prot... 75 2e-13 YPO0333 [K] COG2207 AraC-type DNA-binding domain-containing prot... 74 3e-13 CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing prot... 74 4e-13 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 25/258 (9%) Query: 32 HSHDFSELVVILEGSAIHIIEGREYPVSAGQVFFIHSDISHGYKNVQNIQYVNVMFHPDX 91 H HDF E+ +I EG+ I+ IEG + G + + ++H ++ N H Sbjct: 30 HHHDFLEISIICEGNVIYDIEGERVALEKGDMLIFNPGVNH--YDITEPGMTNAQLH--- 84 Query: 92 XXXXXXXXXXXGFQALFYLEPFFRKEMFFKGMLSLEPRQLDEVNLLLDRILEEHDRQSDG 151 GF+ F LE + R FK + + + +I+EE D + G Sbjct: 85 ----------IGFRN-FALEGYSRNTFPFKKAFLRKKEDESAILSISKQIIEEKDAEKPG 133 Query: 152 YRLMIRTYFTALVGTLSRYYR----QNGG-----GTENKALRIGEAITYIEEHFLQPVSL 202 Y L+++ + L+ + R +N G + K + + E I Y+E+H + VSL Sbjct: 134 YDLILKAFVMQLIIHVLREATPEQLENNGVKLSTDEQQKQMLVNEIIHYMEKHHTEDVSL 193 Query: 203 QDLADLAFMSKRQFLRVFTRNYHTTPMDYIIRKRLDYSCTLLRNPELSISQVAMDSGFRD 262 L+ ++S +VF +P++Y+I+ RL + LL+N ++++ Q A G+ D Sbjct: 194 STLSQTMYISPAYISKVFKEETGESPINYLIKIRLTRAEELLKNKDVTVKQAANMVGYND 253 Query: 263 HNYYSRQFKKVFLCTPSE 280 Y+S+ FKK + PSE Sbjct: 254 AYYFSKLFKKYYGFPPSE 271 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 16/263 (6%) Query: 32 HSHDFSELVVILEGSAIHIIEGREYPVSAGQVFFIHSDISHGYKN-VQNIQYVNVMFHPD 90 H H+ ++ G+A ++ V+ G + I+S+ H ++ N+++ + P Sbjct: 36 HWHEHLQIYYFTAGTAYLECAQNKFDVTTGSIAIINSNELHYLESHSNNLKFYTIRIEPT 95 Query: 91 XXXXXXXXXXXXGFQALFYLEPFFRKEMFFKGMLSLEPRQLDEVNLLLDRILEEHDRQSD 150 YL P + FK ++ + + L+ + IL+E+ ++ Sbjct: 96 FLFSNKEDLLQTK-----YLAPLALNRITFKNLIENDLQILE----CIKTILKEYSSKNI 146 Query: 151 GYRLMIRTYFTALVGTLSRYY-----RQNGGGTENKALRIGEAI-TYIEEHFLQPVSLQD 204 GY L ++ L+ L R Y +N + L + + IEE + + ++L + Sbjct: 147 GYELAVKANIYQLIVYLLRGYVDKILNENEFEERKRILNKFQCVFRLIEEKYTEKLTLNE 206 Query: 205 LADLAFMSKRQFLRVFTRNYHTTPMDYIIRKRLDYSCTLLRNPELSISQVAMDSGFRDHN 264 LAD S F R F + T DYI RL S L+ +L+I+++A+ GF ++N Sbjct: 207 LADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKCGFDNNN 266 Query: 265 YYSRQFKKVFLCTPSEYRTHKAG 287 Y+SR FKK + TP++YR AG Sbjct: 267 YFSRLFKKHYDMTPTKYRKLYAG 289 >mll0736 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 288 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 67/127 (52%) Query: 161 TALVGTLSRYYRQNGGGTENKALRIGEAITYIEEHFLQPVSLQDLADLAFMSKRQFLRVF 220 A V T+S G + R+ EA+ IE PVSL LAD S FLR+F Sbjct: 148 AAAVATISGATSIRRGPSRRDQKRVAEAVRRIELDADGPVSLSTLADETATSPYHFLRIF 207 Query: 221 TRNYHTTPMDYIIRKRLDYSCTLLRNPELSISQVAMDSGFRDHNYYSRQFKKVFLCTPSE 280 + TP ++++ RL + LR + ++S +A D+GF D + ++R+F++V TP + Sbjct: 208 RQVAGMTPYQFLLKTRLHRAAVQLRLSDDAVSAIAFDAGFNDLSTFNRRFRRVMGETPGD 267 Query: 281 YRTHKAG 287 YR ++G Sbjct: 268 YRASRSG 274 >YPO0333 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 290 Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 115/255 (45%), Gaps = 17/255 (6%) Query: 32 HSHDFSELVVILEGSAIHIIEGREYPVSAGQVFFIHSDISHGYKNVQNIQYVNVMFHPDX 91 H+H F E+V++ G+ +H++ Y ++ G VF+I + H Y++V ++ N+++ P+ Sbjct: 34 HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPE- 92 Query: 92 XXXXXXXXXXXGFQALFYLEPFFRKEMFFKGMLSLEPRQLDEVNLLLDRILEEHDRQSDG 151 Q L P ++ +G L + + + ++ ++ +E R++D Sbjct: 93 -------RLHLNAQWHKLLPPLGPEQN--QGYWRLTTQGMAQARPIIQQLAQE-SRKTDS 142 Query: 152 YRLMIRTYFTALVGTLSRYYRQNGGGTENKALRIGEAITYIEEHFLQPVSLQ-DLADLAF 210 + + + + + + +R + L GE + I Q + D+AD Sbjct: 143 WSIQLTEVLLLQLAIVLKRHRYR--AEQAHLLPDGEQLDLIMSALQQSLGAYFDMADFCH 200 Query: 211 ---MSKRQFLRVFTRNYHTTPMDYIIRKRLDYSCTLLRNPELSISQVAMDSGFRDHNYYS 267 + +R ++F + + Y+ + RL ++ LLR E IS +A GF D NY+S Sbjct: 201 KNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSNYFS 260 Query: 268 RQFKKVFLCTPSEYR 282 F + TP +YR Sbjct: 261 AVFTREAGMTPRDYR 275 >CAC1333 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 286 Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 16/257 (6%) Query: 31 VHSHDFSELVVILEGSAIHIIEGREYPVSAGQVFFIHS-DISHGYKNVQNIQYVNVMFHP 89 +H HDF E + G ++IEG+ Y +++G + I+S ++ N Q Y ++ Sbjct: 34 IHHHDFYEFYFFISGDVTYLIEGKSYCLNSGNIILINSRELHQAIINSQRENYERIVLWI 93 Query: 90 DXXXXXXXXXXXXGFQALFYLEPFFRKEMFFKGMLSLEPRQLDEVNLLLDRILEEHDRQS 149 F K +L + Q + +L++I+ + ++ Sbjct: 94 SRVFLQKLSSNEIDLSLCFESNK-------KKNVLIADFEQEKNIRAILNKIISLENYKA 146 Query: 150 DGYRLMIRTYFTALVGTLSRYYRQNGGGTE-----NKALRIGEAITYIEEHFLQPVSLQD 204 GY L+ + Y T L+ + Y + G T+ K+ I E I YI + + +++ Sbjct: 147 MGYELLYKAYITELMVNI--YNLEFSGDTQLSVDTKKSNLIDEIIEYITFNIEEDITIDK 204 Query: 205 LADLAFMSKRQFLRVFTRNYHTTPMDYIIRKRLDYSCTLLRNPELSISQVAMDSGFRDHN 264 +A+ ++SK R F + TT YII+K+L + L+ ++SI+ V GF D++ Sbjct: 205 IAEQFYLSKFHLSREFKKYTGTTIHRYIIQKKLIQAKELIL-KDISITDVYKKCGFGDYS 263 Query: 265 YYSRQFKKVFLCTPSEY 281 + R FK + TP ++ Sbjct: 264 NFFRAFKNEYKITPKQF 280 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,156,488 Number of extensions: 743181 Number of successful extensions: 3360 Number of sequences better than 1.0e-05: 73 Number of HSP's gapped: 4077 Number of HSP's successfully gapped: 73 Length of query: 288 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 183 Effective length of database: 26,268,361 Effective search space: 4807110063 Effective search space used: 4807110063 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)