BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0019.p
         (824 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A      481   e-135

>STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A
          Length = 427

 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 0/822 (0%), Positives = 0/822 (0%), Gaps = 56/822 (6%)

Query: 44  FRDELKEVEFKRHDMPTPWMNYLSNGTFHTMLSHAGGGVAFYKSPQIWRITRYRFFHLPT 103
                 +    R        ++        ML       A   +       + R     +
Sbjct: 6   SHVTPTKKLTIRSISEALPRSHYQRCPECDMLFSLPEMSAHQSAYCPRCQAKIRDGRDWS 65

Query: 104 DRSGPYIYLQDAGTGRYWCPTYEPAFQKPQEWSSSHGLGYTRFEAQEDEVAAKTVYFVGP 163
                 + +        +  +                + +  ++  +          +  
Sbjct: 66  LTRLTAMAVTML-LLMPFAWSEPLLHIYLLGVRIDANVMHGIWQMTQQGDPLTAAMVLFC 124

Query: 164 YENSLIWNLTLTNNSPAVKVLNVYAYAEFGM---MEFMRELQWQCYNKHQV----SVQYH 216
              + +  +          +L +       M   ++    L         V       Y 
Sbjct: 125 VVGAPLILVFSIAYLWFGSLLGMNLRPVLLMLEKLKEWVMLD-IYLVGIGVASIKVQDYA 183

Query: 217 PKEALVYKYGVENQPKPEETPLVYMMSDTPLHSYDGDREEFIGSYRSESNPAAIEQGGCT 276
             +                   V ++  + L     + E+    +  +      ++    
Sbjct: 184 FLQP-----------GIGLLAFVSLVVLSILTMIHLNVEQLWERFYPQRPAQRADERLRV 232

Query: 277 GSTLLGGDPCGALQVQVTLQPGETRTVNFFLG-------------TAMDEVEVEQAIEHS 323
                      A                  +                 + + +     + 
Sbjct: 233 CLGCHFSGYPDAKGRCPRCHIPLRLRRKQSIQKCWAALLASIVFLLPANLLPISVIYING 292

Query: 324 READFVARSYAALKENWDSYLGAWNCELPDADAQRMLNIWNPYQAQRNFLFSRNISFYAT 383
              +    S      + +  + A             + +        +F   + +     
Sbjct: 293 GRQEDTILSGIMSLASSNIAVAAVVFIASILVPFTKVIVMFTLLLSIHFKCQQGLRTRIL 352

Query: 384 GTFRGVGFRDTAQDILAVAPFDPEAAKEKVRLLLGQQYQDGHVNHYFFP--NEGWDPVTS 441
                      +   L V             L         +                + 
Sbjct: 353 LLRLVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAAFYFGAAVILTILAVEWLDSR 412

Query: 442 IHSDDHLWTALAVWDILAETGDAGFLQESLPFYD--GGEGTLYEHLKRAIDFTASRLGPN 499
                                                                       
Sbjct: 413                                                              472

Query: 500 GFPLMLRSDWNDQLFRVC-RQGKGESIWTAMQL------------GTVLLRMKD---LAA 543
                                                                       
Sbjct: 473                                                              532

Query: 544 ASGHPEHAAGYEAMYENQKDLVNTLGWDGQWFRRAVMDDGRFLGTDEHDEAKIWLNAQTW 603
                                                                       
Sbjct: 533                                                              592

Query: 604 ATLSGM-AEPDKAVQAMDSVRDILDTELGIKKLHPSITTFPDPADPLTNYNKGTGENGAV 662
                                                                       
Sbjct: 593                                                              652

Query: 663 FCHANTWAIIAECMLGRGDQAYKYYRQLIPNVAMEQAGIWRYKAEPYVYASNLFGPESDK 722
                                                                       
Sbjct: 653 --                                                           710

Query: 723 FGLANVSWLTGTAAWMYIAATQYIMGIKPVLEGLSIDPCIPSEWEGFTVNRRFRGCLYEI 782
                                                                       
Sbjct: 711                                                              770

Query: 783 SVTNSSHNCKGVKEIRVDGQRLEGNIVPAYPEKAMVKVEVIL 824
                                                     
Sbjct: 771                                            812


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 66,546,794
Number of extensions: 2968079
Number of successful extensions: 6693
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6685
Number of HSP's successfully gapped: 1
Length of query: 824
Length of database: 38,378,431
Length adjustment: 115
Effective length of query: 709
Effective length of database: 25,115,021
Effective search space: 17806549889
Effective search space used: 17806549889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)