BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0016.p
         (77 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2085 [O] COG0695 Glutaredoxin and related proteins                   58   4e-09
VC1616 [O] COG0695 Glutaredoxin and related proteins                   56   1e-08
STM1031 [R] COG5525 Bacteriophage tail assembly protein                52   2e-07

>DR2085 [O] COG0695 Glutaredoxin and related proteins
          Length = 553

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 2/78 (2%), Positives = 17/78 (21%), Gaps = 4/78 (5%)

Query: 4  VIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVWDM--GMRAVPVTVIGD-- 59
          +                 L +        +   +   +  V +     +    +      
Sbjct: 2  INRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQGELTSTWDLML 61

Query: 60 FKIVGMNKTQFDKALANV 77
             + ++++     + + 
Sbjct: 62 QTRINLSRSAVRMMMDSS 79


>VC1616 [O] COG0695 Glutaredoxin and related proteins
          Length = 553

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 6/72 (8%), Positives = 12/72 (16%), Gaps = 1/72 (1%)

Query: 1  MENVIVYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQQVWDMGMRAVPVTVIGDF 60
          M N I   +                G  +                 +  +   +T   D 
Sbjct: 1  MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKS-FVVSNQLREQQGELTSTWDL 59

Query: 61 KIVGMNKTQFDK 72
           +          
Sbjct: 60 MLQTRINLSRSA 71


>STM1031 [R] COG5525 Bacteriophage tail assembly protein
          Length = 712

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 4/71 (5%), Positives = 11/71 (15%), Gaps = 1/71 (1%)

Query: 6  VYTSTNCPHCRQVKSFLSEKGISYEERNIEQNDDYAQ-QVWDMGMRAVPVTVIGDFKIVG 64
              +       V +      +    R ++ +D   +                     V 
Sbjct: 8  GKRKSRNSLASAVVAGCDISSMFRPPRRMKISDAVRKYMRVPRDAGNSVAWESTLTPYVV 67

Query: 65 MNKTQFDKALA 75
                     
Sbjct: 68 EAMNCLSSRSY 78


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,377,250
Number of extensions: 168354
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 38,378,431
Length adjustment: 48
Effective length of query: 29
Effective length of database: 32,842,399
Effective search space: 952429571
Effective search space used: 952429571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)