BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0007.p (326 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 436 e-122 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 338 6e-93 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 246 3e-65 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 237 2e-62 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 233 3e-61 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/297 (69%), Positives = 245/297 (82%) Query: 30 NFKNQKYLWMMSIPFVIWAFVFSYLPLWGWTMAFQKYKPARGFFEQEWVGFDHFKTLFSD 89 K QKYL++MS+PFV W VF+Y PLWGWTMAFQ ++P FFEQEWVG HF LF D Sbjct: 23 TLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQD 82 Query: 90 SQFLLALRNTLAMSGMGLVAGFIFPITFAILLNEVRLGIFKRFAQTVSYLPHFVSWVVAA 149 ++F L LRNTLAMS MGL+ GF PI FA+LLNEVR +FKR QTVSYLPHFVSWVV A Sbjct: 83 NRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVA 142 Query: 150 GIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQGHLFWGIVTLSDVWKETGWNAIIYLAA 209 GIVTKMLS + G+VN +L+ GF+D P+QFMA+G FW IVTLSD+WKE GWN+II+LAA Sbjct: 143 GIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAA 202 Query: 210 ISGIGPELYEASRVDGASRLRQVWHITLPGIRPTIIVLLIMSIGNLLNIGFEKQFLLQNN 269 ++GI P+LYEA++VDGASR RQ+WHITLPGIRPTI+V+LI+SIG+L+ IGFEKQFLL N Sbjct: 203 MAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNP 262 Query: 270 LVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNSVISVILLFTINGIFKRTTKESLL 326 LV DYS+VLDLY+L YGLG+ RYSYGTAI IFNSV+ +ILLF NGIFKR T +S++ Sbjct: 263 LVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSVM 319 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 338 bits (867), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 161/321 (50%), Positives = 224/321 (69%) Query: 5 TATAPIPPDTRKRNKKPASGGRFWRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGWTMAFQ 64 ++ API + KP F++ QK L +MS+PF+IW +F Y+PL+GW++AFQ Sbjct: 16 SSPAPIKQPPKTPAGKPTGIKLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQ 75 Query: 65 KYKPARGFFEQEWVGFDHFKTLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAILLNEV 124 ++PAR F+Q+W GF HF LF+D +F LRNTLAMS + LV GF+ I AILLNE+ Sbjct: 76 DFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNEL 135 Query: 125 RLGIFKRFAQTVSYLPHFVSWVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQGH 184 R FKR QT+SY+PHF+SWVVAAG+V+ LS ENG++N +L+ +G I PI ++ G Sbjct: 136 RNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGE 195 Query: 185 LFWGIVTLSDVWKETGWNAIIYLAAISGIGPELYEASRVDGASRLRQVWHITLPGIRPTI 244 FWGI+ SDVWK GWN IIYLAAI+ I E YEA+ +DGA+RL+++W+ITLPG+RP I Sbjct: 196 YFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVI 255 Query: 245 IVLLIMSIGNLLNIGFEKQFLLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNSV 304 ++LLIM++G +L GFE Q+LL N + D+++ LD++ L+YG+ M +S TA IF +V Sbjct: 256 VILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTV 315 Query: 305 ISVILLFTINGIFKRTTKESL 325 +S I LF+ N I KR + L Sbjct: 316 VSFIFLFSANHIAKRLGEARL 336 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/322 (39%), Positives = 199/322 (61%), Gaps = 10/322 (3%) Query: 4 DTATAPIPPDTRKRNKKPASGGRFWRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGWTMAF 63 ++A IP R++ K R +RN KYL++M +P +++ +F Y+P+WG +AF Sbjct: 13 ESAAPSIPKKVRRQQKL----KRIFRN----KYLYLMILPGLVYFLIFKYVPMWGLIIAF 64 Query: 64 QKYKPARGFFEQEWVGFDHFKTLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAILLNE 123 Q Y+P G EWVGF HF+ LF++ F LRNTL + L+ F PI A+LLNE Sbjct: 65 QDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNE 124 Query: 124 VRLGIFKRFAQTVSYLPHFVSWVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQG 183 +RL +FKRF QT+ Y+PHF+SWV+ + + +++ G++N+I+ I + F+ Sbjct: 125 IRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSIT--GKNVNFLMSE 182 Query: 184 HLFWGIVTLSDVWKETGWNAIIYLAAISGIGPELYEASRVDGASRLRQVWHITLPGIRPT 243 F + L +W+E GW IIY AAI+ I P LYEA+++DGA+R RQ+WHITLP IR Sbjct: 183 DWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSV 242 Query: 244 IIVLLIMSIGNLLNIGFEKQFLLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNS 303 I+VLLI+ IG++L +GFE FL+ N + + +++ D Y GL ++SY TA+ F S Sbjct: 243 IVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKS 302 Query: 304 VISVILLFTINGIFKRTTKESL 325 ++ +I++ N + K+ +E + Sbjct: 303 IVGLIMVMLANWLAKKFGEEGV 324 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 195/315 (61%), Gaps = 5/315 (1%) Query: 15 RKRNKKPASGGR---FWRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGWTMAFQKYKPARG 71 +KR+ + G+ + K K+L+++ IP +++ +F YLP+WG +AF+ Y P G Sbjct: 6 KKRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYSPYLG 65 Query: 72 FFEQEWVGFDHFKTLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAILLNEVRLGIFKR 131 F++ EWVGFD+FK F + F LRNTL ++ + L+ F P+ A+LLNEVR ++KR Sbjct: 66 FWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKR 125 Query: 132 FAQTVSYLPHFVSWVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQFMAQGHLFWGIVT 191 QT Y+PHFVSW + I + + G++N +++ + I F++ F ++ Sbjct: 126 CIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSL--TGEQISFLSDADWFRPMIV 183 Query: 192 LSDVWKETGWNAIIYLAAISGIGPELYEASRVDGASRLRQVWHITLPGIRPTIIVLLIMS 251 + +WKETGW I++LAA++ + E YEA+ +DGA R R++WHITLP IR TIIVLLI+ Sbjct: 184 MQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILR 243 Query: 252 IGNLLNIGFEKQFLLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAINIFNSVISVILLF 311 IG+ LN+GFE+ +L+ N+L + + D Y G+ YSY TA+ +F SV+ +IL+F Sbjct: 244 IGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIF 303 Query: 312 TINGIFKRTTKESLL 326 N I K+ +E L Sbjct: 304 GANYIAKKFDQEGLF 318 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 189/310 (60%), Gaps = 9/310 (2%) Query: 1 MKADTATAPIPPDTRKRNKKPASGGRFWRNFKNQKYLWMMSIPFVIWAFVFSYLPLWGWT 60 M++ T+ RK K+ + R W+ L ++ IP ++ A +F Y P++G Sbjct: 1 MESQAVTSNAKTVERKLKKQKWNFRRTWQ-------LHVLLIPALVLALIFQYGPMFGIV 53 Query: 61 MAFQKYKPARGFFEQEWVGFDHFKTLFSDSQFLLALRNTLAMSGMGLVAGFIFPITFAIL 120 MAFQ YKP GF EWVG HF T+F + NTL +S + ++ G I PI A+L Sbjct: 54 MAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALL 113 Query: 121 LNEVRLGIFKRFAQTVSYLPHFVSWVVAAGIVTKMLSSENGLVNDILLGIGFIDSPIQFM 180 LNE+ + KR QT+ YLP+F+SWV+ GI+ +LS + G+VN LG+ ID PI F+ Sbjct: 114 LNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQ-ALGLFGID-PIFFL 171 Query: 181 AQGHLFWGIVTLSDVWKETGWNAIIYLAAISGIGPELYEASRVDGASRLRQVWHITLPGI 240 F V +SD+WKETG+N I++LAAI+ + P LYEA+ VDGA+R +Q HITLP + Sbjct: 172 GSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAM 231 Query: 241 RPTIIVLLIMSIGNLLNIGFEKQFLLQNNLVTDYSQVLDLYSLKYGLGMARYSYGTAINI 300 P IIV+ +S+GN+LN GF++ F L N LV ++D Y + L +SYGTA+ + Sbjct: 232 LPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGL 291 Query: 301 FNSVISVILL 310 F S+IS++L+ Sbjct: 292 FKSLISLVLI 301 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,842,737 Number of extensions: 952735 Number of successful extensions: 2802 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 2740 Number of HSP's successfully gapped: 140 Length of query: 326 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 219 Effective length of database: 26,037,693 Effective search space: 5702254767 Effective search space used: 5702254767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)