BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0006.p (301 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 191 9e-49 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 188 1e-47 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 179 3e-45 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 177 1e-44 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 176 4e-44 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 105/289 (36%), Positives = 166/289 (57%), Gaps = 7/289 (2%) Query: 13 DRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFTF 72 +R+FD PF++V+A S + V + P F+ D Y IF+ Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFST 62 Query: 73 SGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGMIPV 132 + +S TV GT + + +S++A+ +SR D GR+ + + TM SGGMIP Sbjct: 63 DIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPT 122 Query: 133 YMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYLRVI 192 +++VK LG+++S+ I+P ++AFN+ ++++F +P +L+ESAK+DG ND I+ +++ Sbjct: 123 FLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIV 182 Query: 193 LPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGDYRS 252 LPL PA+ATISLF AV WN + LY S L++ + +SG GD Sbjct: 183 LPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPI--QVLLRQIVIVSSGMQGD--- 237 Query: 253 NIASMASNQVSPE-SLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVK 300 ++ M S PE ++KMA+ +V T+P+L+VYPFIQK+F KG LG+VK Sbjct: 238 -MSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 172/295 (58%), Gaps = 10/295 (3%) Query: 9 KSWADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLK 68 +S R+F+ PF++++A S + ++ ++P F+ D Y Sbjct: 5 QSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRY 64 Query: 69 IFTFSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGG 128 IF+ + IS L TV GT + S++A+ +SR D GR+ + + TM SGG Sbjct: 65 IFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGG 124 Query: 129 MIPVYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIY 188 MIP +++V+ LG+++++ I+P ++AFN+ ++++F +P +L+ESAK+DG ND I+ Sbjct: 125 MIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIF 184 Query: 189 LRVILPLLKPALATISLFLAVGQWNAWFDTYLY-NGSSPHLTTLQYELMKVLQTTTSGNN 247 R++ PL PA+ATISLF AV WN + LY N SS + +Q L++ + +SG Sbjct: 185 FRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSS--MWPIQV-LLRQIVIMSSGMQ 241 Query: 248 GDYRSNIASMASNQVSP--ESLKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVK 300 GD + + + V P +++KMA+ +V T+P+L+VYPFIQK+F KG LG+VK Sbjct: 242 GD----LTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 160/295 (54%), Gaps = 18/295 (6%) Query: 12 ADRIFDFXXXXXXXXXXXXXXXPFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFT 71 A R+FD PFL ++A S + + I+P+ FT D Y +F+ Sbjct: 12 AGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFS 71 Query: 72 FSGLVTGFKISALRTVAGTLLGLISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGMIP 131 + +S TV GT + L +A+ +++ +GR + + +M SGGMIP Sbjct: 72 TPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIP 131 Query: 132 VYMLVKDLGMMNSFAVYIVPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYLRV 191 Y++VK LG+++++ I+P ++ FN+ +I++F LP L+ESAK+DG ++ ++ R+ Sbjct: 132 TYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRI 191 Query: 192 ILPLLKPALATISLFLAVGQWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTT-----SGN 246 LPL KP +AT +LF AVG WN +F LY S ++ L VL+ T + Sbjct: 192 ALPLSKPVIATFALFYAVGIWNDFFHALLYINDSA-----KWPLQMVLRQVTILSDLTAT 246 Query: 247 NGDYRSNIASMASNQVSPES-LKMAITIVVTVPILMVYPFIQKYFVKGMTLGAVK 300 NGD N V PE +K+A+ ++ T+PIL VYPF+QK+F KGM +G+VK Sbjct: 247 NGD-------TMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 160/267 (59%), Gaps = 3/267 (1%) Query: 34 PFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFTFSGLVTGFKISALRTVAGTLLG 93 P L ++ S D V GI+ P ++T + Y ++F+ ++ GF S L + L Sbjct: 41 PLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALT 100 Query: 94 LISASMLAFTVSRPDFQGRKFVSTFLAMTMYISGGMIPVYMLVKDLGMMNSFAVYIVPGL 153 ++ + A+ +S+ D GR++++ FL +TM+ GG++P Y+LVK+LGM+N+ IVPG Sbjct: 101 VLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGA 160 Query: 154 VSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYLRVILPLLKPALATISLFLAVGQWN 213 V+ +N+ + R++ GLP L E+A +DGAND I+ +++LPL KP + + L+ VGQWN Sbjct: 161 VNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWN 220 Query: 214 AWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGDYRSNIASMASNQVSPESLKMAITI 273 ++FD +Y P+L LQ L K+L + G D A+M + E +K A + Sbjct: 221 SYFDAMIYI-KDPNLEPLQLVLRKILIQSQPGQ--DMIGAQAAMNEMKRLAELIKYATIV 277 Query: 274 VVTVPILMVYPFIQKYFVKGMTLGAVK 300 + ++P++++YPF QKYF KG+ G++K Sbjct: 278 ISSLPLIVMYPFFQKYFDKGIMAGSLK 304 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 156/271 (57%), Gaps = 10/271 (3%) Query: 34 PFLNVLAISLNDSVDSVRGGITIYPREFTWDNYLKIFTFSGLVTGFKISALRTVAGTLLG 93 P +++ A+SL+ S + + P +FT D Y + + F IS +R V GT++ Sbjct: 30 PLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFLISVVRVVLGTVIS 89 Query: 94 LISASMLAFTVSRPD--FQGRKFVSTFLAMTMYISGGMIPVYMLVKDLGMMNSFAVYIVP 151 + + A+ +S+ D F+GRKF F +TM +GG++P YM+V LG+ N+ ++P Sbjct: 90 MGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNTIWALVLP 149 Query: 152 GLVSAFNVFVIRSFID-GLPYALQESAKLDGANDFTIYLRVILPLLKPALATISLFLAVG 210 ++AFN+ ++ +F +P +L+ESA +DGAN F I+L++ LP+ PA+AT+SLF V Sbjct: 150 PAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATVSLFTMVF 209 Query: 211 QWNAWFDTYLYNGSSPHLTTLQYELMKVLQTTTSGNNGDYRSNIASMASNQVSPESLKMA 270 WN+WFD +YN + + Y L LQT D+ + +S +++ A Sbjct: 210 HWNSWFDGMIYNNDARN-----YPLQTFLQTIVV--QQDFSQITDAETLRNLSQRTVQAA 262 Query: 271 ITIVVTVPILMVYPFIQKYFVKGMTLGAVKS 301 + +P+L+VYPFIQKYFVKG+ LGA K Sbjct: 263 QIFIAALPMLIVYPFIQKYFVKGIVLGAEKE 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,447,692 Number of extensions: 689701 Number of successful extensions: 2917 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 2755 Number of HSP's successfully gapped: 145 Length of query: 301 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 195 Effective length of database: 26,153,027 Effective search space: 5099840265 Effective search space used: 5099840265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)