BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0005.p
         (559 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ...    57   9e-08

>SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component
          Length = 538

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 114/538 (21%), Positives = 210/538 (39%), Gaps = 103/538 (19%)

Query: 34  TSPLTMTYFSADPNPNWTGMQDEVGKVLTEKTGVTLEAEFAVGDPQQKVALIAASGEYPD 93
           +SPL+      DPN      +  + + L ++TGV ++      D  +K  L  +SG+ PD
Sbjct: 55  SSPLS----PKDPN------EKLILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPD 104

Query: 94  LI----SAKTDISKLVDAGAMLDLTDLIDKYAPNIKKVLGEEGLKRSRYSDDDHAIYAIP 149
            I    ++  D+      G ++ + DLIDKY PN+KK+L E+   ++  +  D  IY+ P
Sbjct: 105 AIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFP 164

Query: 150 TYAGVDNKYFDAGGGFELQHRA----------VKEAGYPEIKTVQDYENVIKAYLEKHPT 199
                     + G G E  H            +K+ G    KT  D   V++A+    P 
Sbjct: 165 WIE-------ELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPN 217

Query: 200 DENGNKNIGMTL---NADDWYMYITVTNPAFITTGSPDDGEYAIDIDTQEVTYHFRRPAE 256
                  I  +    N ++ + ++      F   G  D+ ++ +  +  +V +       
Sbjct: 218 GNGEADEIPFSFISGNGNEDFKFL------FAAFGIGDNDDHLVVGNDGKVDFTADNDNY 271

Query: 257 KEYFRWLNHMNDIGLLDPESFVQKYDQYKAKIATGRVIGLIDQDWGYGDGEKALKAAGKL 316
           KE  +++  + + GL+D E+F   ++ Y   IA G      DQ +G           G  
Sbjct: 272 KEGVKFIRQLQEKGLIDKEAFEHDWNSY---IAKGH-----DQKFGVYFTWDKNNVTGS- 322

Query: 317 DQGYAHFPVTLSEEYKDTSFWPTG---FMAGNGVGISVDA-------KDPVRAIKFLDYL 366
           ++ Y   PV            P+G       NG+G + D        K+     K++D  
Sbjct: 323 NESYDVLPVLAG---------PSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQ 373

Query: 367 ASDEGQVLINWGIEG--KHYNVVDGKRVIPEDVNNRKYNDTT--NFQKETGLGNVGSSYA 422
            +    V  NWG  G  K  N+ +  +     + +   N T     +++T    VG   A
Sbjct: 374 YAPLQSVQNNWGTYGDDKQQNIFELDQA-SNSLKHLPLNGTAPAELRQKT---EVGGPLA 429

Query: 423 LLSAHYGDGVLDPTGSYYTTRFPEQVTAGYNKVEKETLAAYKANTWKDLFPSEDEFKVKP 482
           +L ++YG     P  + +     ++    Y             N +  +F ++++     
Sbjct: 430 ILDSYYGKVTTMPDDAKWRLDLIKEYYVPY---------MSNVNNYPRVFMTQEDL---- 476

Query: 483 WGAAWNITIPGDSEIVVLDNKLKDITWKRIPEAILSKPADFDKVWDAYMGELDKAGVS 540
                        +I  ++  + D  +++  E I++   + D  WD Y  EL+K G+S
Sbjct: 477 ------------DKIAHIEADMNDYIYRKRAEWIVN--GNIDTEWDDYKKELEKYGLS 520


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 44,750,192
Number of extensions: 2150563
Number of successful extensions: 3976
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3973
Number of HSP's successfully gapped: 3
Length of query: 559
Length of database: 38,378,431
Length adjustment: 112
Effective length of query: 447
Effective length of database: 25,461,023
Effective search space: 11381077281
Effective search space used: 11381077281
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 118 (50.1 bits)