BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0166.0003.p
         (126 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_resD [TK] COG0745 Response regulators consisting of a CheY-li...    95   3e-20
all0823 [T] COG0784 FOG: CheY-like receiver                            93   7e-20
STM0468 [T] COG4943 Predicted signal transduction protein contai...    89   1e-18
TM0468 [T] COG0784 FOG: CheY-like receiver                             89   1e-18
all3660 [TK] COG2197 Response regulator containing a CheY-like r...    87   8e-18

>BS_resD [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
          Length = 240

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 3/123 (2%)

Query: 3   KVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMTGI 62
           K+L+VDDE  +R L+   LE  EN  I  AENG EA+ K     YDL++LD MMP   GI
Sbjct: 8   KILVVDDEARIRRLLRMYLER-ENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66

Query: 63  EVLEALDIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGILHEN 122
           EV     I +K A PI+MLTAK +E +R +  +AG   ++ KPFSP E++  V+ +L   
Sbjct: 67  EVCR--QIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124

Query: 123 SET 125
           S+T
Sbjct: 125 SQT 127


>all0823 [T] COG0784 FOG: CheY-like receiver
          Length = 125

 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 3/115 (2%)

Query: 2   QKVLIVDDEEVLRMLIEDTLEDLEN--VEIHTAENGAEALTKLSGQLYDLVILDYMMPEM 59
           QK+LIVDDE  + +L+E  LE LE+  VE+ TA NG EAL  +  +  +LV LD MMP+M
Sbjct: 3   QKILIVDDEPNIVILLEQALEALEDEGVELLTARNGEEALETIKKEQPNLVFLDVMMPKM 62

Query: 60  TGIEVLEALDIE-QKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQ 113
           +G+EV + +  E Q   + I+MLTAK QE D+ +  D GA  ++ KPF P E+L+
Sbjct: 63  SGLEVCQLVKHELQMTNVYIVMLTAKGQEFDKQRGMDVGADLYLTKPFRPKEVLE 117


>STM0468 [T] COG4943 Predicted signal transduction protein containing sensor
           and EAL domains
          Length = 516

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 8/121 (6%), Positives = 24/121 (19%), Gaps = 2/121 (1%)

Query: 2   QKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMTG 61
            + L+     VL + +   +        H                   +  + +  +   
Sbjct: 3   TRHLVSLVTGVLILSVLFPIGL-SLWLAHRQVEKRFNEELDIFSSRVALRTERVSDQAKA 61

Query: 62  IEVLEAL-DIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGILH 120
                A    E  ++  +L +   +      +                 E          
Sbjct: 62  ALTHIASFKGEPCSSAHLLAMRRVSYSFRYVQEVLYLKNSIPVCSSLEKESHIPAFPPPM 121

Query: 121 E 121
           +
Sbjct: 122 K 122


>TM0468 [T] COG0784 FOG: CheY-like receiver
          Length = 122

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 2/121 (1%)

Query: 2   QKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMTG 61
           +KVL+VDD  VLR ++   L+  E  E+  AENG  AL KLS    DL++LD MMP M G
Sbjct: 3   KKVLLVDDSAVLRKIVSFNLKK-EGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDG 61

Query: 62  IEVLEAL-DIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGILH 120
             VL+ L + E+   +P+++LTAK  E D S A   GAR  M KPFSP + ++ V+ +L+
Sbjct: 62  FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121

Query: 121 E 121
           E
Sbjct: 122 E 122


>all3660 [TK] COG2197 Response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain
          Length = 225

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 2   QKVLIVDDEEVLRMLIEDTLEDLENVEIHTAENGAEALTKLSGQLYDLVILDYMMPEMTG 61
           +++L++DD+  L +L++D LE     E+ TAENG EAL  L   + D++I D MMPEM G
Sbjct: 20  KRLLLIDDDPNLILLVKDYLE-FRGYEVITAENGREALEILEHDVPDMIICDVMMPEMDG 78

Query: 62  IEVLEAL-DIEQKNAMPILMLTAKAQENDRSKARDAGARFFMPKPFSPMELLQIVEGILH 120
              +E +   E+ + +P+L L+AK Q  DR K  + GA  +M KPF P EL+  VE  L 
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138

Query: 121 E 121
           +
Sbjct: 139 Q 139


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,760,003
Number of extensions: 334842
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 473
Number of HSP's gapped: 1685
Number of HSP's successfully gapped: 473
Length of query: 126
Length of database: 38,378,431
Length adjustment: 92
Effective length of query: 34
Effective length of database: 27,767,703
Effective search space: 944101902
Effective search space used: 944101902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)