BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0004.p (317 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DRA0007 [V] COG1131 ABC-type multidrug transport system, ATPase ... 206 4e-53 CC1147 [V] COG1131 ABC-type multidrug transport system, ATPase c... 189 7e-48 Cgl1530 [V] COG1131 ABC-type multidrug transport system, ATPase ... 180 2e-45 SA1156 [V] COG1131 ABC-type multidrug transport system, ATPase c... 170 3e-42 ML0590 [V] COG1131 ABC-type multidrug transport system, ATPase c... 167 2e-41 >DRA0007 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 301 Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 115/293 (39%), Positives = 175/293 (59%), Gaps = 6/293 (2%) Query: 18 VIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGTVKV 77 + +VSK + A+ + T+ G +TA+LGPNGAGK+T + +LLGL AP+ G V+V Sbjct: 2 ITTFEQVSKTYGHVTALSDFNLTLRTGELTALLGPNGAGKSTAIGLLLGLSAPSAGQVRV 61 Query: 78 FGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAPADL 137 G P+ VR R GAM QE ++ L VRE + L S+YP P+ ++ + L P Sbjct: 62 LGADPRRNDVRARIGAMPQESALPAGLTVREAVTLFASFYPAPLGVDEALALADLGPV-A 120 Query: 138 NRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGTTIL 197 R A +LSGGQKR LAFALA+ G+P+LL +DEPT G+D +R FW+ V L A G TIL Sbjct: 121 GRRAAQLSGGQKRRLAFALAVVGDPELLLIDEPTTGMDAQSRAAFWEAVTGLRARGRTIL 180 Query: 198 FTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQLLKL 257 TTHYL+EAE ADR+++ + G ++AD +P+ +++ + +SF+ + ++ +L +L Sbjct: 181 LTTHYLEEAERTADRVVVMNGGRILADDTPQGLRSGVGGARVSFV----SDLVQAELERL 236 Query: 258 APVIDC-YDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAFEQLT 309 V D GR + T + L A+ G ++ + + +L+EA+ QLT Sbjct: 237 PGVSAVQVDAAGRADLRTSVPEALLAALIGSGTTFSDLEVRRATLEEAYLQLT 289 >CC1147 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 328 Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 168/311 (54%), Gaps = 15/311 (4%) Query: 3 VQQKHTVTEESDMSHVIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLS 62 ++ + T++ +S + +++V K A++G+ I G A+LGPNGAGK+T ++ Sbjct: 12 IETEPTMSSQSTAPPIAILSKVLKRRGPTLALNGLDLDIRPGQCVALLGPNGAGKSTSVA 71 Query: 63 MLLGLLAPTEGTVKVFGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMD 122 +L G L P G +FG P+ + R R G MLQ + L VRE I L R YY +P Sbjct: 72 LLTGRLRPDAGEAFLFGGDPRTLASRGRMGVMLQSAGLPGALSVREQIDLFRGYYRKPRS 131 Query: 123 MEFLVRATGLAPADLNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHF 182 ++ +VR GL + R LSGGQ+R + FALA+AG P L +DEPT G+D ARR Sbjct: 132 LDEVVRLAGLEGLE-KRRCGALSGGQQRRVQFALAIAGRPDFLVMDEPTTGMDIDARRAL 190 Query: 183 WDTVRELAAGGTTILFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFL 242 W VR A G +L TTH+L EAE +ADRI++ G ++ADG+PE IK+R+ Sbjct: 191 WSAVRSEIARGCAVLLTTHHLDEAEALADRIVVIDHGQVIADGTPEAIKSRV-------- 242 Query: 243 PAGDAATLRG-----QLLKLAPVIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIH 297 +G A R +L LA V G++ + T + LR + V ++ + Sbjct: 243 -SGVAIRCRTRLSDPELASLARVTGVSRDGGKVTLLTTSAPATLRELLARDETVDDLTVS 301 Query: 298 QGSLDEAFEQL 308 SL++A ++L Sbjct: 302 GASLEDAVDRL 312 >Cgl1530 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 340 Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/217 (42%), Positives = 136/217 (62%), Gaps = 3/217 (1%) Query: 19 IEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGTVKVF 78 I +N V K F K+AV GISF + +G + A+LGPNGAGKTT + M G APT G+++V Sbjct: 32 IVVNNVVKRFGTKEAVAGISFEVPRGQVLALLGPNGAGKTTTIEMCEGFTAPTSGSIRVL 91 Query: 79 GLSP--KDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAPAD 136 G+ P + +VR R G MLQ ++V E++ L SY P D E+L+ GL Sbjct: 92 GIDPATEPDQVRRRIGIMLQGGGSYSGIRVFEMLKLAASYNDNPHDPEWLLDLVGLREQR 151 Query: 137 LNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGTTI 196 Y +LSGGQ++ L+ ALAL G P+++FLDEPT G+D +R W+ V +L G TI Sbjct: 152 KTTY-RRLSGGQQQRLSLALALIGRPEIIFLDEPTAGMDAQSRNMVWELVNDLRRDGVTI 210 Query: 197 LFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKAR 233 + TTH + EAE +AD +++ + G ++A G+P+E+ A+ Sbjct: 211 VLTTHLMDEAEALADHVIIVANGQILASGTPDELTAQ 247 >SA1156 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 299 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/288 (30%), Positives = 156/288 (54%), Gaps = 9/288 (3%) Query: 18 VIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGLLAPTEGTVKV 77 +I+++ ++K FN + + ISF I +G A++G NGAGK+T++ +L+G + G + Sbjct: 1 MIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGEI-- 58 Query: 78 FGLSPKDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEFLVRATGLAPADL 137 + E M Q+ D+LKV EII L +S+Y P+ +E ++ T + L Sbjct: 59 --FDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQL 116 Query: 138 NRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDTVRELAAGGTTIL 197 N++ KLSGGQ+R L F L+L G PQL+ LDEPT +D R +FW + L TIL Sbjct: 117 NQFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTIL 176 Query: 198 FTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAGDAATLRGQLLKL 257 +T+HY++E E ++D+I+L G ++ + S I+ Q + D + +L K Sbjct: 177 YTSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQ----ITLSDEYIRKLKLDKD 232 Query: 258 APVIDCYDKDGRIHVATENTDEALRAIFTGGLAVKNVRIHQGSLDEAF 305 VI + +G I + T N ++ + + + + ++ I + S+ +++ Sbjct: 233 DLVIQ-KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSY 279 >ML0590 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 315 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/313 (35%), Positives = 161/313 (51%), Gaps = 19/313 (6%) Query: 8 TVTEESDMSHVIEMNRVSKIFNDKKAVDGISFTIGKGSITAVLGPNGAGKTTMLSMLLGL 67 TV E ++ VI + V K + AV + I + A+LGPNGAGKTT + M G Sbjct: 6 TVPETPEV--VIRLRGVCKHYGSILAVSNLDLDIHSAEVLALLGPNGAGKTTTVEMCEGF 63 Query: 68 LAPTEGTVKVFGLSP--KDVKVRERSGAMLQEVSVMDRLKVREIIALIRSYYPQPMDMEF 125 + P GT++V GL P + ++R R G MLQ + E++ L+ SY P+D E+ Sbjct: 64 VRPDAGTIEVLGLDPITDNARLRARIGVMLQGGGGYPAARAGEMLNLVASYAADPLDPEW 123 Query: 126 LVRATGLAPADLNRYAEKLSGGQKRSLAFALALAGNPQLLFLDEPTVGLDTTARRHFWDT 185 L+ GL Y +LSGGQ++ LA A L G P+L+FLDEPT G+DT AR W+ Sbjct: 124 LLETLGLTDVARTTY-RRLSGGQQQRLALACTLVGRPELVFLDEPTAGMDTHARLLVWEL 182 Query: 186 VRELAAGGTTILFTTHYLQEAEEIADRILLFSQGTLVADGSPEEIKARMVKQSLSFLPAG 245 + L G T++ TTH L+EAEE+ADR+++ G ++A G+P E+ K L F Sbjct: 183 IDTLRRDGVTVVLTTHQLKEAEELADRLVIIDHGRMIAAGTPTELMHTGAKDQLRF---- 238 Query: 246 DAATLRGQLLKLAPVIDCYDKDGRI----HVATENTDEALRAIFTGGLA-----VKNVRI 296 +A R L LA + K + ++ D + A T A N+R+ Sbjct: 239 -SAPPRLDLSLLAFALPEDYKTTELTPGEYLVAGPIDPQVLATVTAWCAQINVLTTNMRV 297 Query: 297 HQGSLDEAFEQLT 309 Q SL++ F LT Sbjct: 298 EQHSLEDVFLDLT 310 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,635,953 Number of extensions: 936504 Number of successful extensions: 19779 Number of sequences better than 1.0e-05: 2153 Number of HSP's gapped: 16893 Number of HSP's successfully gapped: 2396 Length of query: 317 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 211 Effective length of database: 26,153,027 Effective search space: 5518288697 Effective search space used: 5518288697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)