BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0001.p (200 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yvfU [TK] COG2197 Response regulator containing a CheY-like r... 233 1e-61 BS_yocG [TK] COG2197 Response regulator containing a CheY-like r... 213 1e-55 BH0581 [TK] COG2197 Response regulator containing a CheY-like re... 203 1e-52 SP2000 [TK] COG2197 Response regulator containing a CheY-like re... 166 2e-41 SA1159 [TK] COG2197 Response regulator containing a CheY-like re... 154 8e-38 >BS_yvfU [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 200 Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/200 (59%), Positives = 141/200 (70%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIR+ IAEDQR+L GA+ SLLDL L I +L+PDVC+MDIEMP + Sbjct: 1 MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVR 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 SGL VAE L KG +KVIILTTFARPGY ER VKAG GYLLKD +D LADAIR+ + Sbjct: 61 SGLNVAEELMKKGCVSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVK 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G R SPEL F +R+ENPLT RE+EIL+LA G++ +I L+LS GTVRNYISEI+ Sbjct: 121 GKRVFSPELTFNMMRDENPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQ 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL K+R EA +AEEKGWI Sbjct: 181 KLNAKNRTEAASIAEEKGWI 200 >BS_yocG [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 199 Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 109/200 (54%), Positives = 140/200 (70%), Gaps = 2/200 (1%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MI I IAEDQ++L GA+ SLL+L + +++ QPDVC+MDIEMP K Sbjct: 1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGK 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 +GLE AE LK G K+IILTTFARPGY +R +KAG++GYLLKD P ++LA+AIR VM+ Sbjct: 61 TGLEAAEELKDTGC--KIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMN 118 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G R +PEL+ E NPLTDRE+E+L+L G++ EIA L + GTVRNYIS IL Sbjct: 119 GKRIYAPELMEDLYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILE 178 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KLEVK+RIEA+ ++EKGW Sbjct: 179 KLEVKNRIEAITRSKEKGWF 198 >BH0581 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 201 Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 144/201 (71%), Gaps = 1/201 (0%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 MIRIVIAEDQ +L GAM +LL L LA IE+ QPD+C++DIE+P Sbjct: 1 MIRIVIAEDQTMLLGAMTALLQLEDDIKIVAQARNGLEALAAIEKHQPDLCILDIELPNM 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 +GLEVA+ ++ + K++I+TTFAR YL++ + ++GYLLKDEP++ L +AI +VM+ Sbjct: 61 TGLEVAKRIREQEWDCKMMIVTTFARASYLQQAMDLKVEGYLLKDEPIEFLVEAIHKVMN 120 Query: 121 GHREVSPELVFG-SLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEIL 179 G R +SP+L L+EENPLT+RE+E+L+L GG++ +IA VL+L+ GTVRNYIS + Sbjct: 121 GERVLSPDLAMHLFLKEENPLTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAI 180 Query: 180 NKLEVKSRIEAVRLAEEKGWI 200 KLEV++R +A++ AEEKGWI Sbjct: 181 QKLEVENRHQAIQKAEEKGWI 201 >SP2000 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 199 Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/199 (41%), Positives = 126/199 (63%) Query: 2 IRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYKS 61 +++++AEDQ +LR AM LL L + ++E+ D+ ++D+EMP K+ Sbjct: 1 MKVLVAEDQSMLRDAMCQLLMLQPDVESVFQAKNGQEAIQLLEKESVDIAILDVEMPVKT 60 Query: 62 GLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMDG 121 GLEV E ++A+ TKV+++TTF RPGY ER VKAG+ Y+LK+ + L + V++G Sbjct: 61 GLEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKERNIADLMQTLHTVLEG 120 Query: 122 HREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILNK 181 +E SPEL+ + NPLT++E +LK G S EIA L+LS GTVRNY++ IL+K Sbjct: 121 RKEYSPELMEVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSK 180 Query: 182 LEVKSRIEAVRLAEEKGWI 200 L+ +R EA +A+E GW+ Sbjct: 181 LDAGNRTEAANIAKESGWL 199 >SA1159 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 200 Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 119/200 (59%) Query: 1 MIRIVIAEDQRLLRGAMASLLDLXXXXXXXXXXXXXXXXLAVIERLQPDVCLMDIEMPYK 60 M ++IAEDQ +LR AM L+ L + +IE P+V ++DIEMP Sbjct: 1 MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM 60 Query: 61 SGLEVAETLKAKGSATKVIILTTFARPGYLERGVKAGIQGYLLKDEPVDKLADAIRRVMD 120 +GLEV ++ K KVII+TTF RPGY E+ V + Y+LK+ +++L + I +V + Sbjct: 61 TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 120 Query: 121 GHREVSPELVFGSLREENPLTDREREILKLAGGGQSAGEIAAVLHLSYGTVRNYISEILN 180 G +E S L+ ++NPLT +E+ +L+ G G S+ EI+ L L+ GTVRNY S I++ Sbjct: 121 GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID 180 Query: 181 KLEVKSRIEAVRLAEEKGWI 200 KL +R +A + A EKGWI Sbjct: 181 KLFADNRFDAWKKANEKGWI 200 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,136,135 Number of extensions: 517040 Number of successful extensions: 1970 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 1892 Number of HSP's successfully gapped: 154 Length of query: 200 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 99 Effective length of database: 26,729,697 Effective search space: 2646240003 Effective search space used: 2646240003 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)