BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0017.p (388 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3275 [D] COG0772 Bacterial cell division membrane protein 183 4e-46 SP0803 [D] COG0772 Bacterial cell division membrane protein 159 6e-39 L115706 [D] COG0772 Bacterial cell division membrane protein 135 1e-31 lin2521 [D] COG0772 Bacterial cell division membrane protein 130 4e-30 lin2834 [D] COG0772 Bacterial cell division membrane protein 126 7e-29 >BH3275 [D] COG0772 Bacterial cell division membrane protein Length = 398 Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 177/343 (51%), Gaps = 12/343 (3%) Query: 35 KDDGLHIQMIKWYGVGFVAFFGLSLFDYRLLVKYAHYIYMLGVGILVVVSFVGKVKNGAK 94 +D L Q+I +Y VGF+ G+ FDY LL ++ Y++G+ +L+ V G V+NG++ Sbjct: 46 RDFFLKRQVI-FYVVGFIVMIGIMSFDYELLKNFSIPFYVIGLLMLIYVELNGVVRNGSQ 104 Query: 95 GWLEVGGL--SLQPAELFKXXXXXXX--XXXXVRKNKDELLFWRDVVPLS---LVALLPF 147 W+ G QP+E K + N+ + D+V L V + PF Sbjct: 105 RWMNFFGFGPEFQPSEFMKFFLIIALAHMLYLLTTNRTDKSLKGDLVLLGKILAVGMPPF 164 Query: 148 AVVIIQNDLGNALSYMVILVGLLWIGRIKWSHAXXXXXXXXXXXXXXXXXXXNYHEQMTS 207 +++ Q DLG AL ++ ++ + I W N+H + Sbjct: 165 LLILKQPDLGTALVIGSVIATMILVAGISW-RLIFLCLLAVVGGIVTLVYLHNFHYE--- 220 Query: 208 FLSETIGRKHFVARFDPWLVPELASSDDSYQTRNAKIAIASGGLSGEGYMQGGSVQSGKI 267 F S + + H + R WL P+ + +YQT A + I +G L G G+M QS + Sbjct: 221 FFSSNLIKAHQLDRIYGWLNPDEYAGSFAYQTTQAILGIGAGQLFGSGFMNSVQAQSAAV 280 Query: 268 PVLYTDAIFAQIAEEFGFVGXXXXXXXXXXXXHRMIMIALECRERAGPFLIIGIVAMLLY 327 P L+TD IFA I EEFGF+G +RM++IAL C G +L+ GI+ +L++ Sbjct: 281 PELHTDFIFAVIGEEFGFIGATVLLVVFFLMFYRMVIIALTCNNLFGTYLVSGIIGLLVF 340 Query: 328 QIFENIGAYIGLMPLTGITLPFISYGGTSIVINMASMGIAMSV 370 Q+ +NIG +GL P+TG+ LPFISYGGT++V NM ++GI ++V Sbjct: 341 QVVQNIGMTVGLFPVTGLALPFISYGGTALVTNMIAIGIVLNV 383 >SP0803 [D] COG0772 Bacterial cell division membrane protein Length = 407 Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 112/370 (30%), Positives = 187/370 (50%), Gaps = 29/370 (7%) Query: 29 SVTHGRKDDGLHI--QMIKWYGVGFVAFFGLSLFDYRLLVKYAHYIYMLGVGILVV-VSF 85 +V+H ++ L I Q + W +G V F + LF+ L K ++Y+LG+G++++ + F Sbjct: 31 AVSHDYPNNILPILGQQVAWIALGLVIGFVVMLFNTEFLWKVTPFLYILGLGLMILPIVF 90 Query: 86 VGK---VKNGAKGWLEVGGLSL-QPAELFKXXXXXXXXXXXV---RKNKDELLFWRDVVP 138 GAK W+ + G++L QP+E K V +K+K+ WR VP Sbjct: 91 YNPSLVASTGAKNWVSINGITLFQPSEFMKISYILMLARVIVQFTKKHKE----WRRTVP 146 Query: 139 LSLVAL-------LPFAVVI-IQNDLGNALSYMVILVGLLWIGRIKWSHAXXXXXXXXXX 190 L + + +P V++ +Q+DLG AL ++ I G++ + + W Sbjct: 147 LDFLLIFWMILFTIPVLVLLALQSDLGTALVFVAIFSGIVLLSGVSWKIIIPVFVTAVTG 206 Query: 191 XXXXXXXXXNYHEQMTSFLSETIGRKHFVARFDPWLVPELASSDDSYQTRNAKIAIASGG 250 + + +FL + + + R WL P + +YQ +IAI SGG Sbjct: 207 VAGFLAIFISKDGR--AFLHQIGMPTYQINRILAWLNPFEFAQTTTYQQAQGQIAIGSGG 264 Query: 251 LSGEGYMQGGSVQSGKIPVLYTDAIFAQIAEEFGFVGXXXXXXXXXXXXHRMIMIALECR 310 L G+G+ + + IPV +D IF IAE+FGF+G +RM+ I L+ Sbjct: 265 LFGQGF----NASNLLIPVRESDMIFTVIAEDFGFIGSVLVIALYLMLIYRMLKITLKSN 320 Query: 311 ERAGPFLIIGIVAMLLYQIFENIGAYIGLMPLTGITLPFISYGGTSIVINMASMGIAMSV 370 + ++ G++ MLL+ IFENIGA GL+PLTGI LPFIS GG++I+ N+ +G+ +S Sbjct: 321 NQFYTYISTGLIMMLLFHIFENIGAVTGLLPLTGIPLPFISQGGSAIISNLIGVGLLLS- 379 Query: 371 LLYGQDVEED 380 + Y ++ E+ Sbjct: 380 MSYQTNLAEE 389 >L115706 [D] COG0772 Bacterial cell division membrane protein Length = 414 Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 166/350 (47%), Gaps = 18/350 (5%) Query: 32 HGRKDDGLHIQMIKWYGVG-FVAFFGLSLFDYRLLVKYAHYIYMLGVGILVV-VSFVGKV 89 H + L +Q W VG FVA + + D R L + Y+LG+ ++V+ + F K Sbjct: 42 HPTQATNLVVQQGTWVIVGLFVALIVMHM-DSRFLWNLTPFFYLLGLILMVLPIFFYDKA 100 Query: 90 ---KNGAKGWLEVGGLSL-QPAELFKXXXXXXXXXXXV--RKNKDELLFWRD--VVPLSL 141 GAK WL GG +L QP+E K V + N + + D ++ L + Sbjct: 101 TYASTGAKNWLAFGGRNLFQPSEFMKLSYILFSARIVVTFQNNLKKRVLKDDFRLIGLLI 160 Query: 142 VALLPFAVV-IIQNDLGNALSYMVILVGLLWIGRIKWSHAXXXXXXXXXXXXXXXXXXXN 200 + +P A++ + Q D G L + I G++ + I W + Sbjct: 161 LETIPVAILSVFQKDFGTFLVFAAIFAGIILVAGISWKILAPAFLFVAAVAVGIVALVAS 220 Query: 201 YHEQMTSFLSETIGRKHFVARFDPWLVPELASSDDSYQTRNAKIAIASGGLSGEGYMQGG 260 Q FL T ++ V RF WL P S S Q + I++ GGL G+G Sbjct: 221 PEGQ--KFLESTSFAQYQVNRFIAWLHPFEYSQTFSLQQARSLISVGVGGLWGKGI---- 274 Query: 261 SVQSGKIPVLYTDAIFAQIAEEFGFVGXXXXXXXXXXXXHRMIMIALECRERAGPFLIIG 320 V + +PV +D IF IAE+FGF+G +RMI + + + ++ G Sbjct: 275 GVANVNVPVRESDMIFTVIAEDFGFIGSAFLIFLYFMLIYRMIRVTFKSNNQFYTYISTG 334 Query: 321 IVAMLLYQIFENIGAYIGLMPLTGITLPFISYGGTSIVINMASMGIAMSV 370 I M+L+ +FENIGA IG++PLTGI LPFIS GG++++ N+ +G+ +S+ Sbjct: 335 ITMMILFHVFENIGAAIGVVPLTGIPLPFISQGGSALMANIIGLGLVLSM 384 >lin2521 [D] COG0772 Bacterial cell division membrane protein Length = 331 Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 0/349 (0%), Positives = 0/349 (0%), Gaps = 16/349 (4%) Query: 29 SVTHGRKDDGLHIQMIKWYGVGFVAFFGLSLFDYRLLVKYAHYIYMLGVGILVVVSFVGK 88 + + + + + H+ +++ Sbjct: 34 RTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKS 93 Query: 89 VKNGAKGWLEVGGL-SLQPAELFKXXXXXXXXXXXVRKNKDELL--FWRD---VVPLSLV 142 L + + + E L + Sbjct: 94 HSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQ 153 Query: 143 ALLPFAVVIIQNDLGNALSYMVILVGLLWIGRIKWSHAXXXXXXXXXXXXXXXXXXXNYH 202 A + ++ G H Sbjct: 154 PQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNH 213 Query: 203 EQMTSFLSETIGRKHF-VARFDPWLVPELASSDDSYQTRNAKIAIASGGLSGEGYMQGGS 261 R+ ++ + A ++ G Sbjct: 214 LVTWL-----QARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLS----AQ 264 Query: 262 VQSGKIPVLYTDAIFAQIAEEFGFVGXXXXXXXXXXXXHRMIMIALECRERAGPFLIIGI 321 Q + + + I + Sbjct: 265 SSLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRPALWILLVAIIL 324 Query: 322 VAMLLYQIFENIGAYIGLMPLTGITLPFISYGGTSIVINMASMGIAMSV 370 Sbjct: 325 373 >lin2834 [D] COG0772 Bacterial cell division membrane protein Length = 331 Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 0/336 (0%), Positives = 0/336 (0%), Gaps = 21/336 (6%) Query: 49 VGFVAFFGLSLFDYRLLVKYAHYIYMLGV----GILVVVSFVGKVKNGAKGWLEVGGLSL 104 + + + + + L + + + L Sbjct: 48 TQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQK-SHSARQLLAQLGEY 106 Query: 105 QPAELFKXXXXXXXXXXXVRKNKDELLFWRDVVPLSLVALLPFAVVIIQNDLGNALSYMV 164 + + ++ +++ LL ++I + Sbjct: 107 LRLGNNRQAVTDYIRHNFGQTPLNQ---LSPEQLKTILTLLQEGKMVIPQPQQREATDRP 163 Query: 165 ILVGLLWIGRIKWSHAXXXXXXXXXXXXXXXXXXXNYHEQMTSFLSETIGRKHF-VARFD 223 +L + + + + + + Sbjct: 164 LLPAEHNAL-KQLVTKLAAATGEPSKQIWQSMLELSGVKD----GELIPAKLFNHLVTWL 218 Query: 224 PWLVPELASSDDSYQTRNAKIAIASGGLSGEGYMQGGSVQSGKIPVLYTDAIFAQIAEEF 283 + + + S I Y + + ++ Sbjct: 219 QARQTL-SQQNTPTLESLQMTLK------QPLDASELAALSAYIQQKYGLSAQSSLSSAQ 271 Query: 284 GFVGXXXXXXXXXXXXHRMIMIALECRERAGPFLIIGIVAMLLYQIFENIGAYIGLMPLT 343 +M L + + I + + + Sbjct: 272 AEDILNQLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR 331 Query: 344 GITLPFISYGGTSIVINMASMGIAMSVLLYGQDVEE 379 Sbjct: 332 367 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.144 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,754,035 Number of extensions: 987202 Number of successful extensions: 2535 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 2406 Number of HSP's successfully gapped: 106 Length of query: 388 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 280 Effective length of database: 25,922,359 Effective search space: 7258260520 Effective search space used: 7258260520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 117 (49.7 bits)