BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0001.p (215 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0852 [J] COG0621 2-methylthioadenine synthetase 160 2e-39 SA1918 [J] COG0009 Putative translation factor (SUA5) 154 1e-37 VC1079 [J] COG0009 Putative translation factor (SUA5) 148 5e-36 BB0734 [J] COG0009 Putative translation factor (SUA5) 137 1e-32 RSc0577 [J] COG0009 Putative translation factor (SUA5) 124 2e-28 >STM0852 [J] COG0621 2-methylthioadenine synthetase Length = 346 Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 7/173 (4%), Positives = 24/173 (13%), Gaps = 6/173 (3%) Query: 37 VDPALYPQSEGDRQAIAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPS 96 + S + Y + E + Sbjct: 7 PHS-SLE----VSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 97 DNPLIVHIARRSDLDRLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVG 156 ++ ++ ++ G + + Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVS-GPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 157 VRMPDHPLALALIRAADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLDS 209 ++ L +P ++ D Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKI 173 >SA1918 [J] COG0009 Putative translation factor (SUA5) Length = 348 Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 99/159 (62%) Query: 52 IAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLIVHIARRSDLD 111 I E ++ G + PTETVYGL A+A AV ++ AKGRPSDNPLIVHI + L Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 80 Query: 112 RLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPDHPLALALIRA 171 + P L+ AFWPGP++ +LP++PG L V+ GL +V VRMP H + L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGYLCRKVSGGLSSVAVRMPSHSVGRQLLQI 140 Query: 172 ADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLDSQ 210 + P+AAPSAN SGRPSPT HV +DL I G++ ++ Sbjct: 141 INEPLAAPSANLSGRPSPTTFNHVYQDLNARIDGIVQAE 179 >VC1079 [J] COG0009 Putative translation factor (SUA5) Length = 329 Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 52 IAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLIVHIARRSDLD 111 I AA LL++G VA PTETVYGL ADA AV+ +F+AKGRP+++PLIVH+ L Sbjct: 22 IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLS 81 Query: 112 RLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPDHPLALALIRA 171 T++ P A L AFWPGPLT++LP + +SP+VT GL++VG+R+P HP+ L +++ Sbjct: 82 EWATDIAPEAYQLAEAFWPGPLTLLLP-KAKQVSPVVTGGLESVGIRVPAHPVLLDILKT 140 Query: 172 ADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVLD 208 VAAPSAN + SPT A VL+ L G + VLD Sbjct: 141 HRLAVAAPSANPYKKLSPTSAQQVLDGLNGRLAAVLD 177 >BB0734 [J] COG0009 Putative translation factor (SUA5) Length = 337 Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 52 IAEAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLIVHIARRSDLD 111 I +AA L++ G V FPTETVYG+GA+A + AV+ +F K RP +NPLIVH+ + Sbjct: 12 IQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVDTVKKIK 71 Query: 112 RLVTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPDHPLALALIRA 171 L + SA LI F PGPLT VL + +S V+ LDTV +R+P + AL+LI+A Sbjct: 72 ELSEYIPKSALMLIKKFSPGPLTYVLK-KSIKISRFVSGNLDTVAIRIPANKTALSLIKA 130 Query: 172 ADCPVAAPSANRSGRPSPTLAAHVLEDLAGYIGGVL 207 + P+ APSAN S RPS T L++L G + G++ Sbjct: 131 SKVPIVAPSANISKRPSSTNFEMALKELNGLVRGII 166 >RSc0577 [J] COG0009 Putative translation factor (SUA5) Length = 336 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 4/149 (2%) Query: 54 EAAALLREGSTVAFPTETVYGLGADARSTAAVEAVFAAKGRPSDNPLIVHIARRSDLDRL 113 EAA L G VAFPTETVYGLGADA + A+ ++A KGRPS++P+IVH+ +DL Sbjct: 18 EAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLTYW 77 Query: 114 VTEVHPSAAALIGAFWPGPLTVVLPVRPGVLSPLVTAGLDTVGVRMPDHPLALALI---R 170 +V A L+ AFWPGPLT++L P + + V G D+VG+R P HP+A AL+ + Sbjct: 78 ADDVPGIALQLVEAFWPGPLTLILKRAPHIPA-AVAGGQDSVGLRCPSHPVAQALLSRFK 136 Query: 171 AADCPVAAPSANRSGRPSPTLAAHVLEDL 199 +AAPSAN+ G+ SPT A HV ++ Sbjct: 137 RGRGGIAAPSANKFGQVSPTTAQHVRDEF 165 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,027,861 Number of extensions: 680669 Number of successful extensions: 7799 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 7756 Number of HSP's successfully gapped: 39 Length of query: 215 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 113 Effective length of database: 26,614,363 Effective search space: 3007423019 Effective search space used: 3007423019 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)