BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0162.0009.p (292 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2496 [E] COG1760 L-serine deaminase 246 3e-65 BS_ylpA [E] COG1760 L-serine deaminase 223 2e-58 lin1926 [E] COG1760 L-serine deaminase 222 6e-58 SPy2190 [E] COG1760 L-serine deaminase 214 2e-55 CAC0674 [E] COG1760 L-serine deaminase 210 3e-54 >BH2496 [E] COG1760 L-serine deaminase Length = 295 Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/282 (45%), Positives = 176/282 (62%) Query: 3 FQTLSQLAVLCEERGMGIGALMLEEQSEESGRSKEQEFATMSQYYGVMKEAVHRGMTENT 62 F+ +++L L E + + I +M+ ++ E + RS+E M + VM++AV RG+TE Sbjct: 2 FRNVAELVELAESQAIPISEVMIRQEIEVTERSREAIIEQMENHLDVMEKAVRRGITEQV 61 Query: 63 TSRSGLTGLDAQRVASYNAADEPCLGGPAGQAMAYALAVSEVNASMGRIIATPTAGSCGI 122 S SGLTG DA + Y A++ A+A +EVNA+MG I ATPTAG+ G+ Sbjct: 62 RSVSGLTGGDAVLLQDYLKKGNYLSSETVLDAVSKAVATNEVNAAMGTICATPTAGASGV 121 Query: 123 IPGVFLSCQERFGWDDDYVVSGLFAAGAIGYVIANNSFVSGAEGGCQAEVGSAIGMAAGA 182 +PGV ++R + V LF +GA G+V+ANN+ +SGA GGCQAEVGSA GMAA A Sbjct: 122 VPGVLFGMEKRLSPTKEQKVRFLFTSGAFGFVVANNASISGAAGGCQAEVGSATGMAAAA 181 Query: 183 LTELRGGTPAQAVHAVGLALKNTLGLICDPVGGLVEIPCIVRNGFXXXXXXXXXXXXXXX 242 L EL GGTP+Q+ A+ +ALKN LGL+CDPV GLVE+PC+ RN Sbjct: 182 LVELAGGTPSQSAEAMAIALKNMLGLVCDPVAGLVEVPCVKRNAIGASIAITAADMALAG 241 Query: 243 XRSVIPSDEVIKVMLEVGSAMPEKHRETAGGGLAQTPTGRKI 284 +S IP+DEVI M ++G AMP ++ETA GGLA TP GR++ Sbjct: 242 IQSRIPTDEVIDAMYKIGQAMPVAYKETAQGGLAATPKGREL 283 >BS_ylpA [E] COG1760 L-serine deaminase Length = 300 Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 124/286 (43%), Positives = 178/286 (62%), Gaps = 1/286 (0%) Query: 3 FQTLSQLAVLCEERGMGIGALMLEEQSEESGRSKEQEFATMSQYYGVMKEAVHRGMTENT 62 F+ + +L + +E+ + I +M+ ++ E + ++KE F M VM+ AV +G+ E Sbjct: 2 FRNVKELIEITKEKQILISDVMIAQEMEVTEKTKEDIFQQMDHNLSVMEAAVQKGL-EGV 60 Query: 63 TSRSGLTGLDAQRVASYNAADEPCLGGPAGQAMAYALAVSEVNASMGRIIATPTAGSCGI 122 TS++GLTG DA ++ +Y + + G A++ A+A +EVNA+MG I ATPTAGS G+ Sbjct: 61 TSQTGLTGGDAVKLQAYIRSGKSLSGPLILDAVSKAVATNEVNAAMGTICATPTAGSAGV 120 Query: 123 IPGVFLSCQERFGWDDDYVVSGLFAAGAIGYVIANNSFVSGAEGGCQAEVGSAIGMAAGA 182 +PG + +E+ + ++ LF AGA G+V+ANN+ +SGA GGCQAEVGSA GMAA A Sbjct: 121 VPGTLFAVKEKLNPTREQMIRFLFTAGAFGFVVANNASISGAAGGCQAEVGSASGMAAAA 180 Query: 183 LTELRGGTPAQAVHAVGLALKNTLGLICDPVGGLVEIPCIVRNGFXXXXXXXXXXXXXXX 242 + E+ GGTP Q+ A+ + LKN LGL+CDPV GLVE+PC+ RN Sbjct: 181 IVEMAGGTPEQSAEAMAITLKNMLGLVCDPVAGLVEVPCVKRNAMGASNAMIAADMALAG 240 Query: 243 XRSVIPSDEVIKVMLEVGSAMPEKHRETAGGGLAQTPTGRKIMKDL 288 S IP DEVI M ++G MP RET GGLA TPTGR++ K + Sbjct: 241 ITSRIPCDEVIDAMYKIGQTMPTALRETGQGGLAATPTGRELEKKI 286 >lin1926 [E] COG1760 L-serine deaminase Length = 296 Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/286 (44%), Positives = 174/286 (60%), Gaps = 1/286 (0%) Query: 3 FQTLSQLAVLCEERGMGIGALMLEEQSEESGRSKEQEFATMSQYYGVMKEAVHRGMTENT 62 F+T+++L + E + I +M++ + SG +E+ A M + +M+EA+H G Sbjct: 2 FRTVAELVDIAERENLTIAEIMIKREMSISGLPREEITAAMERNLDIMEEAIHEG-EAGV 60 Query: 63 TSRSGLTGLDAQRVASYNAADEPCLGGPAGQAMAYALAVSEVNASMGRIIATPTAGSCGI 122 TS +GLTG DA + Y G ++A A+A +EVNA+MG I ATPTAGS G+ Sbjct: 61 TSTTGLTGGDAVLMQDYIKKGNFLSGEVLLDSVAKAIATNEVNAAMGVICATPTAGSAGV 120 Query: 123 IPGVFLSCQERFGWDDDYVVSGLFAAGAIGYVIANNSFVSGAEGGCQAEVGSAIGMAAGA 182 +PGV S ++R + +V+ LF AGA GYV+ANN+F+SGA GGCQAE+GSA MA+ A Sbjct: 121 VPGVLFSLKDRLDMTREDMVNFLFTAGAFGYVVANNAFISGAAGGCQAEIGSASAMASAA 180 Query: 183 LTELRGGTPAQAVHAVGLALKNTLGLICDPVGGLVEIPCIVRNGFXXXXXXXXXXXXXXX 242 + GGTP Q+ HA+ + +KN LGL+CDPV GLVE+PC+ RN Sbjct: 181 IVAAAGGTPEQSAHAMAMTMKNMLGLVCDPVAGLVEVPCVKRNALGSSQAIISADMALAG 240 Query: 243 XRSVIPSDEVIKVMLEVGSAMPEKHRETAGGGLAQTPTGRKIMKDL 288 +S IP DEVI+ M VG MP RETA GGLA TPTGR I + + Sbjct: 241 IKSRIPCDEVIEAMHRVGLQMPSSLRETAEGGLAATPTGRAIQRKI 286 >SPy2190 [E] COG1760 L-serine deaminase Length = 290 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/282 (45%), Positives = 165/282 (58%), Gaps = 2/282 (0%) Query: 3 FQTLSQLAVLCEERGMG-IGALMLEEQSEESGRSKEQEFATMSQYYGVMKEAVHRGMTEN 61 F T+ +L +++ G I LM+ + E SGR++E MS+ VMK AV G+T + Sbjct: 2 FYTIEELVKQADQQFNGNIAELMIATEVEMSGRNREDIIKIMSRNLQVMKAAVTEGLT-S 60 Query: 62 TTSRSGLTGLDAQRVASYNAADEPCLGGPAGQAMAYALAVSEVNASMGRIIATPTAGSCG 121 T S SGLTG DA ++ +Y A+ A+AV+E+NA MG + ATPTAGS G Sbjct: 61 TKSISGLTGGDAVKMDNYIKKGNSLSDTTILNAVRNAIAVNELNAKMGLVCATPTAGSAG 120 Query: 122 IIPGVFLSCQERFGWDDDYVVSGLFAAGAIGYVIANNSFVSGAEGGCQAEVGSAIGMAAG 181 +P V + E+ + + LF AGA G VI NN+ +SGAEGGCQAEVGSA M+A Sbjct: 121 CLPAVLATAIEKLDLSEKEQLEFLFTAGAFGLVIGNNASISGAEGGCQAEVGSAAAMSAA 180 Query: 182 ALTELRGGTPAQAVHAVGLALKNTLGLICDPVGGLVEIPCIVRNGFXXXXXXXXXXXXXX 241 AL + GGT QA A+ +KN LGL+CDPV GLVE+PC+ RN Sbjct: 181 ALVKAAGGTSHQASQAIAFVIKNLLGLVCDPVAGLVEVPCVKRNALGASFALVAADMALA 240 Query: 242 XXRSVIPSDEVIKVMLEVGSAMPEKHRETAGGGLAQTPTGRK 283 S IP DEVI M +VGSAMP RETA GGLA TPTGR+ Sbjct: 241 DIDSQIPVDEVIDAMYQVGSAMPTAFRETAEGGLAATPTGRR 282 >CAC0674 [E] COG1760 L-serine deaminase Length = 290 Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 162/279 (58%), Gaps = 4/279 (1%) Query: 13 CEERGMGIGALMLEEQSEESGRSKEQEFATMSQYYGVMKEAVHRGMTENTTSRSGLTGLD 72 C +R + I +EE+ +S + E F+ M + VMK A G S SGL G D Sbjct: 13 CTKRKISIADYTIEEEISKSQTNYEYVFSRMKKNLEVMKSAAEYGTENKVKSMSGLIGGD 72 Query: 73 AQRVASYNAADEPCLGGPAGQAMAYALAVSEVNASMGRIIATPTAGSCGIIPGVFLSCQE 132 ++ +Y+ ++ G +AMA A+A SEVNASMG+I+A PTAGSCGI+P V L+ E Sbjct: 73 GFKLNNYSKKEDTITGSIMVKAMARAIACSEVNASMGKIVAAPTAGSCGILPAVILTVGE 132 Query: 133 RFGWDDDYVVSGLFAAGAIGYVIANNSFVSGAEGGCQAEVGSAIGMAAGALTELRGGTPA 192 +F DD + LF A IG +IA N+ +SGAEGGCQAE GSA M AGA+ E+ GGTP Sbjct: 133 KFSKSDDELTKALFTASGIGMLIAKNATLSGAEGGCQAECGSAAAMGAGAVVEMLGGTPE 192 Query: 193 QAVHAVGLALKNTLGLICDPVGGLVEIPCIVRNGFXXXXXXXXXXXXXXXXRSVIPSDEV 252 A+ A + +KN LGL+CDPV GLVE+PC RN S+IP D+ Sbjct: 193 MALDAASIVIKNVLGLVCDPVAGLVEVPCSKRNVSGAVNAITTADMVMAGVGSIIPFDDS 252 Query: 253 IKVMLEVGSAMPEKHRETAGGGLAQTPTGRKIMKDLRNK 291 + M VG +P + RETA GGLA T G+ +L+NK Sbjct: 253 VSAMYRVGKQLPCELRETALGGLAVTKKGQ----ELKNK 287 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,143,386 Number of extensions: 795908 Number of successful extensions: 1863 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 1783 Number of HSP's successfully gapped: 32 Length of query: 292 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 187 Effective length of database: 26,268,361 Effective search space: 4912183507 Effective search space used: 4912183507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)