BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0162.0003.p
         (188 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0922_2 [M] COG0791 Cell wall-associated hydrolases (invasion-...    97   2e-20
NMB1197 [G] COG0063 Predicted sugar kinase                             83   3e-16
NMB1159 [G] COG0063 Predicted sugar kinase                             83   3e-16
MK0808_2 [G] COG0063 Predicted sugar kinase                            57   2e-08

>STM0922_2 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 310

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 2   LRLSTGRDVTAVGPGLGRFAGDQEWLRALWEGIAAPMVIDADALNILADSDYSSWTSRCH 61
           L LS   DV A+GPGLG     +E++    + +  P VIDADA+N+L   D S    R  
Sbjct: 123 LELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLEKPAVIDADAINVL---DTSVLKERKS 179

Query: 62  PVILTPHPGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAYVN 121
           P +LTPHPGEMARL   +  +V+ +   LA  +A+E+   LVLK A T+V   E   + N
Sbjct: 180 PAVLTPHPGEMARLVKKTVGDVKYN-YELAEEFAKENDCVLVLKSATTIVTDGEKTLF-N 237

Query: 122 ITXXXXXXXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGE 167
           IT           DVLT                    VYLHG A E
Sbjct: 238 ITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAE 283


>NMB1197 [G] COG0063 Predicted sugar kinase
          Length = 296

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 37  PMVIDADALNILA-DSDYSSWTSRCHPVILTPHPGEMARLAGISTAEVQRDRIGLALAYA 95
           P+V+DADALNIL+ D++  +    C  +ILTPHP E ARL G + A+VQ DR        
Sbjct: 133 PVVLDADALNILSTDAETRNLARGCKNLILTPHPAEAARLLGTTVAQVQADRTAAVRKIG 192

Query: 96  REHRVTLVLKGAHTVVATPEGEAYVNITXXXXXXXXXXXDVLTXXXXXXXXXXXXXXXXX 155
                T+VLKG  T+VA+P+ E YVN +           DVL                  
Sbjct: 193 AIFGATVVLKGHKTLVASPDTEIYVNESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAA 252

Query: 156 XFGVYLHGLAGERAARQRHDPSALIAGDIIEA 187
             G +LHG A +         + L+AG+I  A
Sbjct: 253 CAGAWLHGAAADVIKESAGIAAGLLAGEIAPA 284


>NMB1159 [G] COG0063 Predicted sugar kinase
          Length = 296

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 37  PMVIDADALNILA-DSDYSSWTSRCHPVILTPHPGEMARLAGISTAEVQRDRIGLALAYA 95
           P+V+DADALNIL+ D++  +    C  +ILTPHP E ARL G + A+VQ DR        
Sbjct: 133 PVVLDADALNILSTDAETRNLARGCKNLILTPHPAEAARLLGTTVAQVQADRTAAVRKIG 192

Query: 96  REHRVTLVLKGAHTVVATPEGEAYVNITXXXXXXXXXXXDVLTXXXXXXXXXXXXXXXXX 155
                T+VLKG  T+VA+P+ E YVN +           DVL                  
Sbjct: 193 AIFGATVVLKGHKTLVASPDTEIYVNESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAA 252

Query: 156 XFGVYLHGLAGERAARQRHDPSALIAGDIIEA 187
             G +LHG A +         + L+AG+I  A
Sbjct: 253 CAGAWLHGAAADVIKESAGIAAGLLAGEIAPA 284


>MK0808_2 [G] COG0063 Predicted sugar kinase
          Length = 312

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 69/180 (38%), Gaps = 8/180 (4%)

Query: 7   GRDVTAVGPGLGRFAGDQEWLRALWEGIAAPMVIDADALNILADSDYSSWTSRCHPVILT 66
           G D   VGPGLG  A     LR L E     +++DAD L  ++  +           +LT
Sbjct: 118 GVDTVVVGPGLGADADSVGILRELAESFDGMIIVDADGLRGISGVNVDDR------FVLT 171

Query: 67  PHPGEMARLAGISTAEVQRDRIGLALAYAREHRVTLVLKGAHTVVATPEGEAYVNITXXX 126
           PH GE  R  G        DR       + E   T++LKG   V+ +P+GE   N+T   
Sbjct: 172 PHAGEFRREFGEELGRSLEDRSEAVRRVSEELGCTILLKGRVDVIGSPDGEIRWNVTGTP 231

Query: 127 XXXXXXXXDVLTXXXXXXXXXXXXXXXXXXFGVYLHGLAGERAARQRHDPSALIAGDIIE 186
                   DVL                    G ++ G AG  A  +R     L A D+ E
Sbjct: 232 AMTVGGTGDVLAGVVAGVAARCREGFEAACIGAFVVGSAGCLA--ERRLSQGLTAEDVAE 289


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,390,609
Number of extensions: 439468
Number of successful extensions: 1994
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1987
Number of HSP's successfully gapped: 4
Length of query: 188
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 88
Effective length of database: 26,845,031
Effective search space: 2362362728
Effective search space used: 2362362728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)