BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0047.p (260 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1368 [O] COG0396 ABC-type transport system involved in Fe-S cl... 229 4e-60 STM1368 [R] COG1823 Predicted Na+/dicarboxylate symporter 229 4e-60 PH1384 [O] COG0396 ABC-type transport system involved in Fe-S cl... 162 6e-40 NMA0937_1 [R] COG0073 EMAP domain 144 9e-35 MA0937 [O] COG0396 ABC-type transport system involved in Fe-S cl... 144 9e-35 >TM1368 [O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component Length = 246 Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/229 (50%), Positives = 165/229 (72%), Gaps = 3/229 (1%) Query: 15 EGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGTAVLEGEDLLEMA 74 E KEILKG+NL+++ GE+H +MGPNG+GKSTLA+ +MG+P+Y VTEG V EG + ++ Sbjct: 14 EDKEILKGVNLEIEKGEVHVLMGPNGSGKSTLANVIMGNPRYIVTEGDIVFEGNSIKDLP 73 Query: 75 VDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFIRQMEAKMKELDM 134 +ERA+ G+ + Q P E+ GV S FL +A RR G + + + +++E ++L + Sbjct: 74 PNERAKLGIMMTFQNPYEVEGVKLSQFLITA--HRRIHGEDKNYLELRKELEETAEKLGL 131 Query: 135 NPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDALKIVAEGVNSMRS 194 + +FL RYLN GFSGGEKKR+EILQ + L PK++ILDEIDSGLD+DAL+++A + + Sbjct: 132 DKDFLERYLNVGFSGGEKKRSEILQSLFLRPKLLILDEIDSGLDVDALRLIANLIARLNE 191 Query: 195 PERGFLVITHYQRLLNYIKP-DFVHVMMQGRIVKSGGPELAERLEAEGY 242 L+ITHY+RLL+++K D VHV + GRIV SGGPELA+ +E +GY Sbjct: 192 EGVTLLIITHYKRLLDHLKRIDKVHVYVDGRIVTSGGPELADEIEEKGY 240 >STM1368 [R] COG1823 Predicted Na+/dicarboxylate symporter Length = 448 Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 14/229 (6%), Positives = 47/229 (20%), Gaps = 3/229 (1%) Query: 15 EGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGTAVLEGEDLLEMA 74 IL+ + I G + + + E +++ + + Sbjct: 14 FSWVILRINQKSDSLSKSVFIAIFLGAVIGLSLHFISANHTKTIIEWYSIVGNGYVHLLK 73 Query: 75 VDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFIRQMEAKMKELDM 134 + + + + + + + Sbjct: 74 LVAIPLIFISILSAINKLENSAGIGKMSLTI--VGCMLCLVMVAGFIGLLTAHVLGLDAS 131 Query: 135 NPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDALKIVAEGVNSMRS 194 + L + + L P + LD + ++ + + Sbjct: 132 AFVHMPSMLTTEEVNKTAAVSIPQLVTSLIPTNIFLDLTGARSVSVIGIVIFTLIAGIAL 191 Query: 195 PERGFLVITHYQRLLNYIKP-DFVHVMMQGRIVKSGGPELAERLEAEGY 242 + Q+L I + M ++ + + Sbjct: 192 LKVKKEAPEEGQKLSAGINAIQIWVMKMVRIVIALTPYGVMALMTTVFS 240 >PH1384 [O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component Length = 247 Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 18/238 (7%) Query: 16 GKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGTAVLEGEDLLEMAV 75 G+EILKG+NL + GE H IMGPNG+GKSTLA L GHP Y+VT+G E +++ + Sbjct: 13 GREILKGVNLTVNEGEFHVIMGPNGSGKSTLALTLAGHPNYKVTKGGIFFEDKEITNLTP 72 Query: 76 DERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFIRQMEA------KM 129 DERA+ G+ LA Q P EI GV DFL +S I+ + EA K Sbjct: 73 DERAKMGILLAFQVPPEIQGVRIIDFLTQT----------LSEIKNLDASEAYNIIIEKA 122 Query: 130 KELDMNPEFLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDALKIVAEGV 189 KEL + L RY+N GFSGGE+KR E+LQ ++L+PK++ILDE DSG+D+D+L +++ + Sbjct: 123 KELWFREDDLRRYINVGFSGGERKRLELLQALLLEPKLLILDEPDSGVDVDSLSVISRKI 182 Query: 190 NSMRSPERGFLVITHYQRLLNYIKPD--FVHVMMQGRIVKSGGPELAERLEAEGYEWV 245 + ++ITHY R+ +I + V++M G+IV GG EL +E +G++ + Sbjct: 183 EELHKKGVSIILITHYGRIFGHIDKEKLKVNIMRDGKIVMRGGSELISMIEEKGFKAI 240 >NMA0937_1 [R] COG0073 EMAP domain Length = 235 Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 15/220 (6%) Query: 15 EGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGTAVLEGEDLLEMA 74 +GK+IL+G+NL++ EIH+I+G NG GKSTLA LMG YE EG + +GED+ ++ Sbjct: 4 DGKKILRGVNLEVGDREIHSIIGANGAGKSTLAYTLMGLQGYEHEEGDIIFDGEDVAVLS 63 Query: 75 VDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFIRQMEAK--MKEL 132 + ERAR G+ LA Q P+ G+ D+L AI +R G I + E K ++++ Sbjct: 64 ITERARKGITLAWQEPARFEGLKVRDYL--AIGARDNGG--------ITEEEIKEALRKV 113 Query: 133 DMNPE-FLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDALKIVAEGVNS 191 D+ PE +L R + E SGGE+KR E+ ++ + PK+ ILDE DSG+D+ +LK + + + Sbjct: 114 DLKPEKYLDREVGEALSGGERKRIELASIITMKPKLAILDEPDSGIDVVSLKEIISLIRT 173 Query: 192 MRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGP 231 + LVITH + + D +M +G I++SG P Sbjct: 174 FKENGSSVLVITHREEIAA--ASDKASLMCEGVILRSGDP 211 >MA0937 [O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component Length = 235 Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 15/220 (6%) Query: 15 EGKEILKGINLQMKGGEIHAIMGPNGTGKSTLASALMGHPKYEVTEGTAVLEGEDLLEMA 74 +GK+IL+G+NL++ EIH+I+G NG GKSTLA LMG YE EG + +GED+ ++ Sbjct: 4 DGKKILRGVNLEVGDREIHSIIGANGAGKSTLAYTLMGLQGYEHEEGDIIFDGEDVAVLS 63 Query: 75 VDERARAGLFLAMQYPSEISGVTNSDFLRSAINSRREEGNEISLIRFIRQMEAK--MKEL 132 + ERAR G+ LA Q P+ G+ D+L AI +R G I + E K ++++ Sbjct: 64 ITERARKGITLAWQEPARFEGLKVRDYL--AIGARDNGG--------ITEEEIKEALRKV 113 Query: 133 DMNPE-FLHRYLNEGFSGGEKKRNEILQMMMLDPKIVILDEIDSGLDIDALKIVAEGVNS 191 D+ PE +L R + E SGGE+KR E+ ++ + PK+ ILDE DSG+D+ +LK + + + Sbjct: 114 DLKPEKYLDREVGEALSGGERKRIELASIITMKPKLAILDEPDSGIDVVSLKEIISLIRT 173 Query: 192 MRSPERGFLVITHYQRLLNYIKPDFVHVMMQGRIVKSGGP 231 + LVITH + + D +M +G I++SG P Sbjct: 174 FKENGSSVLVITHREEIAA--ASDKASLMCEGVILRSGDP 211 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,777,356 Number of extensions: 837946 Number of successful extensions: 18392 Number of sequences better than 1.0e-05: 1199 Number of HSP's gapped: 17630 Number of HSP's successfully gapped: 1256 Length of query: 260 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 156 Effective length of database: 26,383,695 Effective search space: 4115856420 Effective search space used: 4115856420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)