BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0043.p (465 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3467 [O] COG0719 ABC-type transport system involved in Fe-S cl... 778 0.0 BS_yurU [O] COG0719 ABC-type transport system involved in Fe-S c... 756 0.0 SA0778 [O] COG0719 ABC-type transport system involved in Fe-S cl... 743 0.0 lin2506 [O] COG0719 ABC-type transport system involved in Fe-S c... 728 0.0 L29491 [O] COG0719 ABC-type transport system involved in Fe-S cl... 647 0.0 >BH3467 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 465 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/465 (77%), Positives = 418/465 (89%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAKK P++ EY+YGF D SIF+S +GLT EIV+EIS +K EP+WMLDFRLK+LEQFYK Sbjct: 1 MAKKMPEIGEYKYGFSDRDVSIFRSKRGLTREIVEEISRMKQEPQWMLDFRLKSLEQFYK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP+WGG+L ELDFDDI YYV+PSEK ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLTELDFDDITYYVKPSEKSERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M+++LE+ G+IF DTD+AL+E+ ++FK++FGTIIPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEELGIIFKDTDSALKENEDIFKEYFGTIIPPTDNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGVK E PLQAYFRINSENMGQFERTLI+ADEDS VHYVEGCTAP+Y+TNS Sbjct: 181 SGGSFIYVPKGVKTETPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+ K+A RYTTIQNWAPN+YNLVTKRAVA ENATMEW+DGNIGSKLTMKYP Sbjct: 241 LHSAVVEIIVKKDAYCRYTTIQNWAPNVYNLVTKRAVAYENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 AV++KG GAKG++LSIA+AGK QHQDAGAK++HLAP+ GGKV+YRG+A Sbjct: 301 AVIMKGEGAKGTILSIAIAGKGQHQDAGAKVLHLAPNCSSTIVSKSISKQGGKVSYRGIA 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 FGRK++G+KS I+CDTLI+DN+STSDTIPYNEI+N++I LEHEATVSKVSE+QLFYLMS Sbjct: 361 HFGRKSQGSKSKIECDTLIMDNESTSDTIPYNEILNNDITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RG++E EAT+MIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 >BS_yurU [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 465 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/465 (75%), Positives = 406/465 (87%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAKK PD+ EY+YGF D+ SIF+S +GLT EIV+EIS +K EP+WMLDFRLK+LE FY Sbjct: 1 MAKKMPDIGEYKYGFHDKDVSIFRSERGLTKEIVEEISRMKEEPQWMLDFRLKSLEHFYN 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP+WGG+L+ L+FD+I YYV+PSE+ ++W+EVP EIK+TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLNSLNFDEITYYVKPSERSERSWDEVPEEIKQTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M+++LE QG++F DTD+AL+E+ ++F++ + +IPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEAQGIVFKDTDSALKENEDIFREHWAKVIPPTDNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGVK E PLQAYFRINSENMGQFERTLI+ DE++ VHYVEGCTAP+Y+TNS Sbjct: 181 SGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEEASVHYVEGCTAPVYTTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+ K RYTTIQNWA N+YNLVTKR V EENATMEW+DGNIGSKLTMKYP Sbjct: 241 LHSAVVEIIVKKGGYCRYTTIQNWANNVYNLVTKRTVCEENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 A +LKG GA+G LSIA+AGK QHQDAGAKMIHLAP+ GGKVTYRG+ Sbjct: 301 ACILKGEGARGMTLSIALAGKGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIV 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 FGRKAEGA+SNI+CDTLI+DN+STSDTIPYNEI+NDNI LEHEA VSKVSEEQLFYLMS Sbjct: 361 HFGRKAEGARSNIECDTLIMDNKSTSDTIPYNEILNDNISLEHEAKVSKVSEEQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RG++E EAT+MIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 >SA0778 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 465 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/465 (74%), Positives = 401/465 (86%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAKKAPD+ +Y+YGF D+ SIF+S +GLT IV+EIS +KNEPEWMLDFRLK+L+ FYK Sbjct: 1 MAKKAPDVGDYKYGFHDDDVSIFRSERGLTENIVREISNMKNEPEWMLDFRLKSLKLFYK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP+WGG+L EL+FDDI YYV+PSE+ ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLSELNFDDITYYVKPSEQAERSWDEVPEEIKRTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M+K LE++G+IF DTD+AL+E+ ELFKK+F +++P ADNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMEKELEEKGIIFKDTDSALQENEELFKKYFASVVPAADNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPK +K + PLQAYFRINSENMGQFERTLI+ADE + VHYVEGCTAP+Y+T+S Sbjct: 181 SGGSFIYVPKNIKLDTPLQAYFRINSENMGQFERTLIIADEGASVHYVEGCTAPVYTTSS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+ K+A VRYTTIQNWA N+YNLVTKR EN MEWVDGN+GSKLTMKYP Sbjct: 241 LHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYENGNMEWVDGNLGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 VL G GAKGS LSIA AGK Q QDAGAKMIH AP+ +GGKV YRG+ Sbjct: 301 NCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNGGKVIYRGIV 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 FGRKA+GA+SNI+CDTLILDN+STSDTIPYNE+ ND I LEHEA VSKVSEEQLFYLMS Sbjct: 361 HFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RG++E EAT+MIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 >lin2506 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 464 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/460 (72%), Positives = 395/460 (85%) Query: 6 PDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYKMPMPK 65 P++ EYQYGF D+ S+F++ +GLT ++V+EIS IK EPEWML+FRLK+LEQFYKMPMP Sbjct: 5 PEIGEYQYGFHDKDTSVFRTERGLTEKVVREISNIKEEPEWMLEFRLKSLEQFYKMPMPT 64 Query: 66 WGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVSAQYES 125 WGG+L EL F+DI YYV+PSE+ ++W+EVP EIK TFDKLGIPEAEQK+LAG SAQYES Sbjct: 65 WGGDLSELKFEDITYYVKPSEQTVRSWDEVPEEIKRTFDKLGIPEAEQKYLAGASAQYES 124 Query: 126 EVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVWSGGSF 185 EVVYH+M+++LED G++F DTD+AL+E+ ++FK++F +IPP+DNKFAALNSAVWSGGSF Sbjct: 125 EVVYHNMKQDLEDLGIVFKDTDSALKENEDIFKEYFAKVIPPSDNKFAALNSAVWSGGSF 184 Query: 186 IYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNSLHSAV 245 IYVP G+K + PLQAYFRINSENMGQFERTLI+ DE++ V+YVEGCTAP+Y+TNSLHSAV Sbjct: 185 IYVPPGIKVDTPLQAYFRINSENMGQFERTLIIVDENASVNYVEGCTAPVYTTNSLHSAV 244 Query: 246 VEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYPAVVLK 305 VEI+ A RYTTIQNWA N+YNLVTKR EENATMEW+DGNIGSKLTMKYPAV L+ Sbjct: 245 VEIIVKPGAYCRYTTIQNWANNVYNLVTKRTFCEENATMEWIDGNIGSKLTMKYPAVHLR 304 Query: 306 GRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLASFGRK 365 G GA+G+ LSIA+AGK Q QDAGAKM+H AP+ GG VTYRG+ FGR Sbjct: 305 GEGARGTTLSIAIAGKGQRQDAGAKMMHYAPNTSSTIVSKSISKQGGNVTYRGIVHFGRN 364 Query: 366 AEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMSRGLTE 425 A+GA+SNI+CDTLI+DN STSDTIPYNEI+N NI LEHEA VSKVSEEQLFYLMSRGL+E Sbjct: 365 ADGARSNIECDTLIMDNLSTSDTIPYNEILNSNISLEHEAKVSKVSEEQLFYLMSRGLSE 424 Query: 426 AEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 EAT+MIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 425 EEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 464 >L29491 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 311 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/459 (0%), Positives = 0/459 (0%) Query: 7 DMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYKMPMPKW 66 ++ + ++ L + + + + K+ + Sbjct: 12 SLKNLKRNGWMTVAAVSSVTITLVLVGLFLSVILNTSKISNGIENNVRIVAYMKLDVHDQ 71 Query: 67 GGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVSAQYESE 126 + + + K + ++VP+ F E G + Sbjct: 72 ETKIQDPKDNKKTINNPDHLKIYDSIKKVPNVKTVEFSSKEAQLKELTKALGNNWNLFKG 131 Query: 127 VVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVWSGGSFI 186 + + + + F G + Sbjct: 132 DANPLYDAYIVEADKPANVKSVTSKISKLSGIEKATYGGANTAKLFQIAQGIRTWGTAAA 191 Query: 187 YVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNSLHSAVV 246 + V + + + ++ ++ ++ + + Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPGL 251 Query: 247 EILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYPAVVLKG 306 + T + + K + M + IGS + LK Sbjct: 252 IVAWAYRLAFVSLTPSLQSQKLAMFAPKEFIPAIVGLMAVIGILIGSFGALLSMRRFLKI 311 Query: 307 RGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLASFGRKA 366 Sbjct: 312 371 Query: 367 EGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMSRGLTEA 426 Sbjct: 372 431 Query: 427 EATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 Sbjct: 432 470 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,724,423 Number of extensions: 1328718 Number of successful extensions: 2536 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 2396 Number of HSP's successfully gapped: 80 Length of query: 465 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 355 Effective length of database: 25,691,691 Effective search space: 9120550305 Effective search space used: 9120550305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)