BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0038.p
         (118 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1535 [S] COG0586 Uncharacterized membrane-associated protein       119   1e-27
BS_yngC [S] COG0586 Uncharacterized membrane-associated protein        92   2e-19
DR2612 [S] COG0586 Uncharacterized membrane-associated protein         80   6e-16
slr0509 [S] COG0586 Uncharacterized membrane-associated protein        72   3e-13
BS_ykoX [S] COG0586 Uncharacterized membrane-associated protein        69   1e-12

>lin1535 [S] COG0586 Uncharacterized membrane-associated protein
          Length = 208

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 74/112 (66%)

Query: 1   MQQLLASISETALHLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEV 60
           +  L+ S+ +  + LVD+           +ES CIP+PSEVIML GGF+   G L F  V
Sbjct: 2   LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61

Query: 61  VVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILLNAHHLEQAERWFARFG 112
           V AG  GNL+GS++AYY+G+ GGR L+ K+GKYI LN  HL++AE WF R+G
Sbjct: 62  VFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYG 113


>BS_yngC [S] COG0586 Uncharacterized membrane-associated protein
          Length = 198

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 56/79 (70%)

Query: 37  IPSEVIMLSGGFLVAQGSLTFAEVVVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILL 96
           IPSE+++  GG++V++G++ F   ++AG +G  I  I  Y++GR GGR  LDKYGKY+L+
Sbjct: 29  IPSEIVLAYGGYMVSEGTIGFIGAIIAGVIGGTIAQIFIYWIGRYGGRPFLDKYGKYLLI 88

Query: 97  NAHHLEQAERWFARFGEGT 115
             HH++ +E WF ++G G 
Sbjct: 89  KKHHIDMSENWFQKYGAGV 107


>DR2612 [S] COG0586 Uncharacterized membrane-associated protein
          Length = 205

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 14  HLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEVVVAGAVGNLIGSI 73
           +L+D+           LE+   PIPSE+IM S GF  A+G ++   VV+ G +G++IG++
Sbjct: 7   NLMDSMGYLGILLLMVLENVFPPIPSELIMPSAGFAAARGDMSLGMVVLMGTLGSVIGTL 66

Query: 74  LAYYVGRAGGRRLL----DKYGKYILLNAHHLEQAERWFARFGEG 114
             YY+GRA G   L    DK+GK++ L+   +++A+ WF R+G G
Sbjct: 67  PLYYIGRAFGEDKLVAWADKHGKWLTLSGKDIKKADAWFDRYGAG 111


>slr0509 [S] COG0586 Uncharacterized membrane-associated protein
          Length = 205

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 30  LESACIPIPSEVIMLSGGFLVAQGSLTFAEVVVAGAVGNLIGSILAYYVGRAGG----RR 85
           LE+   PIPSE+IM   GF VAQG L     +VAG +G ++G+   YY+G+        +
Sbjct: 27  LENLFPPIPSELIMPLAGFAVAQGKLELFPAIVAGIIGTILGAYPWYYIGKWVSEERLEQ 86

Query: 86  LLDKYGKYILLNAHHLEQAERWFARFGE 113
           L D+YGK+I L+A  + ++  WF R+G 
Sbjct: 87  LADRYGKWIGLDAKDIHKSNVWFGRYGH 114


>BS_ykoX [S] COG0586 Uncharacterized membrane-associated protein
          Length = 221

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 53/76 (69%)

Query: 37  IPSEVIMLSGGFLVAQGSLTFAEVVVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILL 96
           IP+EV++   G+ V++G +T A VV+AG++G + G +  Y++GR GGR  L+++GKY+ +
Sbjct: 41  IPAEVVLPLAGYWVSKGDMTLAGVVLAGSLGGVAGPLTLYWIGRYGGRPFLERFGKYLFI 100

Query: 97  NAHHLEQAERWFARFG 112
               L++++ +F + G
Sbjct: 101 KPEALDKSDNFFKKHG 116


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,696,542
Number of extensions: 263111
Number of successful extensions: 873
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 19
Length of query: 118
Length of database: 38,378,431
Length adjustment: 85
Effective length of query: 33
Effective length of database: 28,575,041
Effective search space: 942976353
Effective search space used: 942976353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)