BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0035.p (229 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0321 [TK] COG0745 Response regulators consisting of a CheY-li... 302 3e-82 lin2644 [TK] COG0745 Response regulators consisting of a CheY-li... 198 7e-51 BS_phoP [TK] COG0745 Response regulators consisting of a CheY-li... 195 5e-50 CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 193 2e-49 lin0315 [TK] COG0745 Response regulators consisting of a CheY-li... 189 2e-48 >CAC0321 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 137/228 (60%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 3 RTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLNGF 62 + ILI+EDE SIAEL++DYLE++ ++ +I V+G+ GLE + +ELI+LD+MLP+++GF Sbjct: 2 KKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGF 61 Query: 63 EVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRYDR 122 E+CK+IR + PILMV+A++EDID +RGLGLGADDYMTKPF P+ELVARVKAH+SRY+R Sbjct: 62 EICKQIRKIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121 Query: 123 LKGRGSST--SELEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQL 180 L + E+EIRGL +N SR+ F+ +E T KEFDLL FLAQ+P+ VFSK++L Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181 Query: 181 FERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRFR 228 F+++WG+DS G+ TVTVHI+K+REKIE+D++NP YIET+WGAGYRFR Sbjct: 182 FDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRFR 229 >lin2644 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 236 Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 155/234 (66%), Gaps = 12/234 (5%) Query: 5 ILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLNGFEV 64 IL+V+DE SI L + +E G+ A +G G EL+LS K +LIVLD+MLP+++G EV Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 63 Query: 65 CKRIRGE-LDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRYDRL 123 K++R + + +PILM+TA+ E++D + GL LGADDYMTKPF P E+VAR+KA L R + Sbjct: 64 TKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE-- 121 Query: 124 KGRGSSTSE--------LEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVF 175 G+ T E + I L++ PDS +++D+ + LT KEF+LL FLA H VF Sbjct: 122 -GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVF 180 Query: 176 SKDQLFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRFRS 229 S+DQL + +W D +G+T+ V VH+ LR+KIE D+ P YI+T+ G GY+ + Sbjct: 181 SRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKMEN 234 >BS_phoP [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 223 Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 0/234 (0%), Positives = 0/234 (0%), Gaps = 8/234 (3%) Query: 1 MKRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLN 60 M+ ++ + + ++ L + Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 Query: 61 GFEVCKRIRGE-LDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSR 119 R L I +L +D V G + + + Sbjct: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 Query: 120 YDRLKGRGSSTSELEIRG------LRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNH 173 S E + + + Sbjct: 121 GL-ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Query: 174 VFSKDQLFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRF 227 Sbjct: 180 233 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 148/226 (65%), Gaps = 1/226 (0%) Query: 3 RTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLNGF 62 RT+L+V+DE I +L YL G+ A NG + LE+ + +L++LD+M+PK++G Sbjct: 4 RTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGI 63 Query: 63 EVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRYDR 122 C +IR + + PI+M++A+ ED+D + GL GADDY++KPF P EL+ARVK+ + RY + Sbjct: 64 TTCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTK 123 Query: 123 LKGR-GSSTSELEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQLF 181 L S+++ +E+ + +N D+ I D VSLT +EFD+L L+++ VFS ++++ Sbjct: 124 LNSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIY 183 Query: 182 ERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRF 227 E +W + TV VHIRK+REKIE++ P YI+T+WG GY+ Sbjct: 184 ESVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKI 229 >lin0315 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 237 Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/231 (43%), Positives = 153/231 (66%), Gaps = 3/231 (1%) Query: 2 KRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLNG 61 ++ IL+V+DE IA++ + L G+ A +G++ LEL + +LI+LD+MLP +G Sbjct: 3 EKKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDG 62 Query: 62 FEVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRYD 121 EVC+ +R + D+PI+MVTA+ +ID V GL LGADDY+TKPF EL+ARVKA+L R+ Sbjct: 63 IEVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122 Query: 122 RL---KGRGSSTSELEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKD 178 ++ SELEI L ++PD+ A R E + LT +EF+LL++LA+H V +++ Sbjct: 123 QVSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTRE 182 Query: 179 QLFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRFRS 229 L + +WG D GD +TV V +R+LREKIE++ ++P ++ T G GY R+ Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRN 233 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.140 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,163,527 Number of extensions: 747572 Number of successful extensions: 2624 Number of sequences better than 1.0e-05: 476 Number of HSP's gapped: 2172 Number of HSP's successfully gapped: 477 Length of query: 229 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 126 Effective length of database: 26,499,029 Effective search space: 3338877654 Effective search space used: 3338877654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)