BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0016.p (281 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_licT [K] COG3711 Transcriptional antiterminator 267 2e-71 BH0297 [K] COG3711 Transcriptional antiterminator 242 4e-64 BH0781 [K] COG3711 Transcriptional antiterminator 230 2e-60 CAC1406 [K] COG3711 Transcriptional antiterminator 219 4e-57 CAC0422 [K] COG3711 Transcriptional antiterminator 219 4e-57 >BS_licT [K] COG3711 Transcriptional antiterminator Length = 277 Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 125/262 (47%), Positives = 191/262 (72%), Gaps = 1/262 (0%) Query: 16 NQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLTELLNDIPVAHLELAN 75 N++GKE++VMGRG++F K +GD VD +I+KVF L+ + + + LL DIP+ +E++ Sbjct: 16 NEQGKELVVMGRGLAFQKKSGDDVDEARIEKVFTLDNKDVSEKFKTLLYDIPIECMEVSE 75 Query: 76 EIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLFEIKRFYKKEFSIGMD 135 EI+ YA LG +L+D++Y++LTDHI+FA+QR +KG+ +KNA+L+E KR YK EF+IG + Sbjct: 76 EIIHYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKDEFAIGKE 135 Query: 136 ALQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIVQNILNIITYHYKVVL 195 AL ++ TG +L EDEAGFIALH+VNA ++ EM + I +T+++Q IL+I+ YH+K+ Sbjct: 136 ALVMVKNKTGVSLPEDEAGFIALHIVNAELN-EEMPNIINITKVMQEILSIVKYHFKIEF 194 Query: 196 DESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKAFECASKINDYLEKAY 255 +E SL+Y RF+THL++F+ R+ S +DFL + VK+ Y +A+EC KI Y+E+ Y Sbjct: 195 NEESLHYYRFVTHLKFFAQRLFNGTHMESQDDFLLDTVKEKYHRAYECTKKIQTYIEREY 254 Query: 256 AQSLGKDEYVYLTIHIQRVTER 277 L DE +YLTIHI+RV ++ Sbjct: 255 EHKLTSDELLYLTIHIERVVKQ 276 >BH0297 [K] COG3711 Transcriptional antiterminator Length = 277 Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 113/261 (43%), Positives = 184/261 (70%), Gaps = 1/261 (0%) Query: 17 QKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLTELLNDIPVAHLELANE 76 ++ +E+IV GRGI F K GD ++ +KIDKVF L + + + LL ++P+ ++E+ E Sbjct: 17 EQKQELIVTGRGIGFQKKRGDELEEEKIDKVFSLKDRAVSEKFKSLLYEVPMEYMEVTEE 76 Query: 77 IVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLFEIKRFYKKEFSIGMDA 136 I++YA L +L+D++Y++LTDHI+FA++RF+ GIT+ + +L+E++R YK+EF+IGM+A Sbjct: 77 IISYAKEKLAKDLNDSIYISLTDHINFALERFQNGITISHGLLWELRRLYKEEFAIGMEA 136 Query: 137 LQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIVQNILNIITYHYKVVLD 196 L+ I+ G L EDEAGFI H++NA ++ M + +T++V ++LNI+ YH+K+ D Sbjct: 137 LRIIKDRLGIELPEDEAGFITTHIINAELNEG-MPNISNITKVVHDLLNIVRYHFKMEYD 195 Query: 197 ESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKAFECASKINDYLEKAYA 256 E SL + RF+THL++F+ R+L + NS +DFL VK+ + +A++C KI ++L+ Y Sbjct: 196 EDSLTFFRFVTHLKFFAQRLLSGTSLNSKDDFLLQIVKENHSEAYDCTLKIGEFLKAQYH 255 Query: 257 QSLGKDEYVYLTIHIQRVTER 277 L K+E +YLTIHI+RV R Sbjct: 256 YELTKEEQLYLTIHIERVVNR 276 >BH0781 [K] COG3711 Transcriptional antiterminator Length = 252 Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/253 (43%), Positives = 169/253 (66%), Gaps = 1/253 (0%) Query: 25 MGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLTELLNDIPVAHLELANEIVTYANGI 84 MG+GI F +GD VD KI+K+F LN E T R LL ++P+ +E+ +I+ +A Sbjct: 1 MGKGIGFQAKSGDPVDKTKIEKIFTLNSQETTERFRTLLREVPIEVMEVTEQIIQHAKMA 60 Query: 85 LGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLFEIKRFYKKEFSIGMDALQFIEKAT 144 +L+D +Y+ LTDHI+FA++R +KG +KNA+L+EI++ Y+ EF+IG A++ IEK Sbjct: 61 YKKDLNDIIYVALTDHINFAIERVKKGYEIKNALLWEIRKLYQDEFAIGQHAIEIIEKKL 120 Query: 145 GFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIVQNILNIITYHYKVVLDESSLNYSR 204 G L EDEA FIALH+VNA ++ E+ + I +T++ ++IL I+ YH+ LDE SLNY R Sbjct: 121 GITLSEDEAAFIALHIVNAELN-EEVPNVINITKLTKHILKIVKYHFNTDLDEDSLNYFR 179 Query: 205 FLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKAFECASKINDYLEKAYAQSLGKDEY 264 F+THL++F R++ + +S +D ++ VK+ + +F C KI +Y++K Y L +E Sbjct: 180 FITHLKFFCQRLINRTFLSSDDDTFFDIVKEKHKDSFACTEKIKEYIKKQYDYELTNEEM 239 Query: 265 VYLTIHIQRVTER 277 +YLTIHI RV R Sbjct: 240 LYLTIHIDRVIHR 252 >CAC1406 [K] COG3711 Transcriptional antiterminator Length = 277 Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 177/281 (62%), Gaps = 7/281 (2%) Query: 1 MIIEKXXXXXXXXTKNQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLT 60 M I+K +N E +VMG GI+F K G+ VD I+K F+L + + + Sbjct: 1 MTIKKIFNNNAIIAENSDKHEFVVMGCGIAFKKNIGEKVDERLIEKTFILKGKDASEKFK 60 Query: 61 ELLNDIPVAHLELANEIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLF 120 LL D+P ++ + +I+ YA +L +L+D++Y+TLTDH+ + E GI + N +++ Sbjct: 61 MLLEDVPTEYVSVCYDIIEYAKNVLDAKLNDHIYVTLTDHVSNCFKMIESGIIIHNPLIW 120 Query: 121 EIKRFYKKEFSIGMDALQFIEKATGFALGEDEAGFIALHLVNARMDG--NEMKSTIKMTE 178 EIK+FY KEF +G+ A+ FI+ G L EDEA IALHL+NA+++ N ++ K + Sbjct: 121 EIKKFYPKEFKVGLKAIDFIKDELGKDLPEDEAANIALHLINAQINNSLNNVEDAAKQAK 180 Query: 179 IVQNILNIITYHYKVVLDESSLNYSRFLTHLQYFSMRVLKKETSNSG-EDFLYNQVKQTY 237 ++Q+ILNI+ Y Y +VLDE S++Y RF+THL++F R+ K ET ++ EDFL QV++ Y Sbjct: 181 MIQDILNIVKYTYNIVLDEKSISYERFVTHLRFFFHRIDKSETVDTAEEDFLLKQVREKY 240 Query: 238 VKAFECASKINDYLEKAYAQSLGKDEYVYLTIHIQRVTERH 278 A++C K+ YL + L +E +YLT+HIQRV++++ Sbjct: 241 KDAYQCMLKVQKYL----GKELSDEEKLYLTVHIQRVSKKN 277 >CAC0422 [K] COG3711 Transcriptional antiterminator Length = 282 Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 173/256 (67%), Gaps = 4/256 (1%) Query: 21 EVIVMGRGISFNKVAGDYVDPDKIDKVFLL-NENEFTARLTELLNDIPVAHLELANEIVT 79 E ++MG+GI+F K GD ++ +KI+K+F + N+NE + L+++IP+ H++++ I++ Sbjct: 22 EKVIMGKGIAFQKKPGDILNEEKIEKIFSIENQNE-NLKFQSLISEIPIEHIKVSENIIS 80 Query: 80 YANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLFEIKRFYKKEFSIGMDALQF 139 YA L + +++Y++LTDH+ FA +R+ KGI +KN ML++IKR YKKE++IGM A+++ Sbjct: 81 YAKRKLDVKFDEHIYISLTDHLSFAFRRYSKGIKIKNNMLWDIKRIYKKEYNIGMWAVEY 140 Query: 140 IEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIVQNILNIITYHYKVVLDESS 199 I+ G + EDEAGFIALH+++A ++ M +TI +TEI+ ILNII Y + + +E Sbjct: 141 IKGELGIKMDEDEAGFIALHIIDASLN-ESMDNTINITEIIDGILNIIKYFFSIEFNEDD 199 Query: 200 LNYSRFLTHLQYFSMRVL-KKETSNSGEDFLYNQVKQTYVKAFECASKINDYLEKAYAQS 258 ++Y R LTHL+YF+ RV+ +K + E VK Y +A+ C KI ++EK Y Sbjct: 200 MSYDRLLTHLKYFAQRVVSRKNAIDEEEKSFLEIVKTNYKEAYRCVGKIKSFIEKNYDYE 259 Query: 259 LGKDEYVYLTIHIQRV 274 + E VYLT+H+QRV Sbjct: 260 VKGGEIVYLTLHVQRV 275 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,068,235 Number of extensions: 736208 Number of successful extensions: 1407 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 1365 Number of HSP's successfully gapped: 21 Length of query: 281 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 176 Effective length of database: 26,268,361 Effective search space: 4623231536 Effective search space used: 4623231536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)