BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0011.p
         (267 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv3119 [H] COG0314 Molybdopterin converting factor, large subunit      90   3e-18
MT3201 [H] COG0314 Molybdopterin converting factor, large subunit      90   3e-18
MT3424_2 [H] COG0314 Molybdopterin converting factor, large subunit    84   3e-16
Rv3323c_2 [H] COG0314 Molybdopterin converting factor, large sub...    84   3e-16

>Rv3119 [H] COG0314 Molybdopterin converting factor, large subunit
          Length = 147

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 128 ITDQPLNGEALLDKVLDVNHGASLLFVXXXXXXXXXXXXXALHYEAYVPMALAKLEEI-G 186
           +TDQPL+ + +L  V     G  ++FV              L YEAY PM +  L  I G
Sbjct: 15  LTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIG 74

Query: 187 REVGERWNARCAIAHRTGLVALKEASVMIAVSAAHRDMCYEASRYAIEKLKASVPVWKKD 246
           R   +    R A+AHRTG + + +A+V+I  SA HR   ++A+R  IE LK  VP+WKK+
Sbjct: 75  RCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKE 134

Query: 247 INDSGEQWLGADP 259
            + +G +W+G  P
Sbjct: 135 FSSTGAEWVGDRP 147


>MT3201 [H] COG0314 Molybdopterin converting factor, large subunit
          Length = 147

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 128 ITDQPLNGEALLDKVLDVNHGASLLFVXXXXXXXXXXXXXALHYEAYVPMALAKLEEI-G 186
           +TDQPL+ + +L  V     G  ++FV              L YEAY PM +  L  I G
Sbjct: 15  LTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIG 74

Query: 187 REVGERWNARCAIAHRTGLVALKEASVMIAVSAAHRDMCYEASRYAIEKLKASVPVWKKD 246
           R   +    R A+AHRTG + + +A+V+I  SA HR   ++A+R  IE LK  VP+WKK+
Sbjct: 75  RCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKE 134

Query: 247 INDSGEQWLGADP 259
            + +G +W+G  P
Sbjct: 135 FSSTGAEWVGDRP 147


>MT3424_2 [H] COG0314 Molybdopterin converting factor, large subunit
          Length = 141

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 128 ITDQPLNGEALLDKVLDVNHGASLLFVXXXXXXXXXXXXXALHYEAYVPMALAKLEEIGR 187
           +TD+PL+ + +L+ +   + G +++FV              L+YEAY  M    L +I  
Sbjct: 9   LTDEPLSVDEVLNAISGPSQGGAVIFVGTVRNNNNGHEVTKLYYEAYPAMVHRTLMDIIE 68

Query: 188 EVGERWNA-RCAIAHRTGLVALKEASVMIAVSAAHRDMCYEASRYAIEKLKASVPVWKKD 246
           E   + +  R A+AHRTG + + +A+V+I  SA HR   ++A+R  IE+LK  VP+WKK+
Sbjct: 69  ECERQADGVRVAVAHRTGELRIGDAAVVIGASAPHRAAAFDAARMCIERLKQDVPIWKKE 128

Query: 247 INDSGEQWLGADP 259
               G +W+   P
Sbjct: 129 FALDGVEWVANRP 141


>Rv3323c_2 [H] COG0314 Molybdopterin converting factor, large subunit
          Length = 141

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 128 ITDQPLNGEALLDKVLDVNHGASLLFVXXXXXXXXXXXXXALHYEAYVPMALAKLEEIGR 187
           +TD+PL+ + +L+ +   + G +++FV              L+YEAY  M    L +I  
Sbjct: 9   LTDEPLSVDEVLNAISGPSQGGAVIFVGTVRNNNNGHEVTKLYYEAYPAMVHRTLMDIIE 68

Query: 188 EVGERWNA-RCAIAHRTGLVALKEASVMIAVSAAHRDMCYEASRYAIEKLKASVPVWKKD 246
           E   + +  R A+AHRTG + + +A+V+I  SA HR   ++A+R  IE+LK  VP+WKK+
Sbjct: 69  ECERQADGVRVAVAHRTGELRIGDAAVVIGASAPHRAAAFDAARMCIERLKQDVPIWKKE 128

Query: 247 INDSGEQWLGADP 259
               G +W+   P
Sbjct: 129 FALDGVEWVANRP 141


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,505,599
Number of extensions: 647189
Number of successful extensions: 1080
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1077
Number of HSP's successfully gapped: 6
Length of query: 267
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 162
Effective length of database: 26,268,361
Effective search space: 4255474482
Effective search space used: 4255474482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)