BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0005.p (444 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 80 6e-15 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 79 2e-14 PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 71 3e-12 lin2972 [G] COG1653 ABC-type sugar transport system, periplasmic... 71 3e-12 SP1690 [G] COG1653 ABC-type sugar transport system, periplasmic ... 71 3e-12 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 14/243 (5%) Query: 54 RPENGAIVQTVKELADRFAADHPGFKLDLQVTAD-RPSYLTKLRTLVASGQMPDFIDSDA 112 PE + VKE F DHP +D+Q+ A SY K++ ++ + PD S + Sbjct: 43 EPEKSYFEEVVKE----FEKDHPD--IDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWS 96 Query: 113 DPFAQELVNGGLLVDMEKFLKDEGLYDKFYEPALKYQELP---DGSLYLLPMEYHMEMTW 169 D FA + + G +D+ + K++ + ++ Q P + Y +P + + + Sbjct: 97 DEFAFKFIRGNKALDLSSYYKNDTDWS---SQLVQSQITPFTYENKQYGVPWQMDAKSFF 153 Query: 170 YNKKIFADNNLTVPKTLDDLLAVSKALKDKGITPIAVDGVDVWPVLRYAAMYPFRTTGNQ 229 YNK IF NL PKT D+L+ VSK LK+ G TPI+ W + Y R + Sbjct: 154 YNKDIFQKLNLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEK 213 Query: 230 FI-RDLSQGKAKMSDAAGMQAANFASQIGKYFQDGFATTDYTTAKNLFLNGQAAMYNMGT 288 +D + + +D ++A ++ YF + D+ + F +G++AM T Sbjct: 214 TREKDYNAKTGEFTDEGYVKALEKLQELMPYFNKHVNSVDHEYVRQQFKSGKSAMIYAET 273 Query: 289 WEI 291 EI Sbjct: 274 AEI 276 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 24/285 (8%) Query: 55 PENGAIVQTVKELADRFAADHPGFKLDLQVTADRPSYLTKLRTLVASGQMP-DFIDSDAD 113 P +GA + K++ D + +P + + VT L T + + Q P D + + Sbjct: 70 PWSGAEYEYFKQVLDEYQKINPNVEFEY-VTRRAEEIAQILPTQLEAKQAPADVVITSFG 128 Query: 114 PFAQELVNGGLLVDMEKFLKDEGLYDKFYEPALKYQELPDGSLYLLPMEYHMEMT-WYNK 172 F E+ G +VD+ + ++P +G ++ P ++ WY K Sbjct: 129 WFVVEMAKRGHVVDLTNVINPNEYVTGIFDPVTY-----EGKIWATPFTIVLKPGFWYRK 183 Query: 173 KIFADNNLTVPKTLDDLLAVSKALKDKGITPIAV-DGVDVWPVLRYAAMYPFRTTGNQFI 231 F + L+ P+T D+ L + K LK+ G+TPIA DGV WP+ + G Sbjct: 184 SFFQQHGLSEPQTWDEFLQLLKRLKEIGVTPIASGDGVG-WPLSDVTEAFIIAYAGPDVF 242 Query: 232 RDLSQGKAKMSDAAGMQAANFASQIGKYFQDGF--ATTDYTTAKNLFLNGQAAMYNMGTW 289 R L++ K K D A F +I ++G+ ++T A + NG +Y MGTW Sbjct: 243 RGLTEKKVKFDDP--RINAVFRDRISLLLREGYFGEPEEWTQAVEKWWNGTYGIYFMGTW 300 Query: 290 EIPSFVEE-------SLPE--GLKGNVDYFYLPTTSNAVTPDNEF 325 I V+ +PE G+ G DY ++P S EF Sbjct: 301 -ILGMVDNPDDVGFFPMPETKGITGGTDYIFVPVYSPVRNEAVEF 344 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 11/252 (4%) Query: 67 LADRFAADHPGFKLDLQVTADRPSYLTK--LRTLVASGQMPDFIDSDADPFAQELVNGGL 124 LA +F +P K+ + K L++L+ +G+ PD A + Sbjct: 62 LAKKFEKKYPNIKIKANPVSGGGGVNLKMVLQSLMLAGKPPDTFQVHAGYEMARYIKANQ 121 Query: 125 LVDMEKFLKDEGLYDKFYEPALKYQELPDGSLYLLPMEYHM-EMTWYNKKIFADNNL--T 181 L ++ ++ K Y ++ + + Y +P+ H + WYNK+IF + + Sbjct: 122 LTPIDDIWTED--MKKNYPKVIQQMVIFNNHYYAVPINVHRANVIWYNKQIFKKYGIDPS 179 Query: 182 VPKTLDDLLAVSKALKDKGITPIAVDGVDVWPVLRYAAMYPFRTTGNQFIRDLSQGKAKM 241 KT+DDL AV++ LK+ G+TP A+ + WP + + G + G+ Sbjct: 180 SIKTIDDLFAVAEKLKENGVTPFALGDRNKWPATQVFEVMLVAVGGVDYYEKFINGEISA 239 Query: 242 SDAAGMQAANFASQIGKYFQDGFATTDYTTAKNLFLNGQAAMYNMGTWEIPSFVEESLPE 301 +D + + + +Y A + A L G+AAM MG W F + Sbjct: 240 NDPTLKKVLEYFVKYVEYSNPDHAAKTWDEACALVYKGEAAMTLMGDWANGYFKA----K 295 Query: 302 GLKGNVDYFYLP 313 G K NVDY +P Sbjct: 296 GWKPNVDYGAIP 307 >lin2972 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 430 Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 10/270 (3%) Query: 37 AGASNAPKEQTVTWLSARPENGAIVQTVKELADRFAADHPGFKLDLQVTADRPSYLTKLR 96 G + KE T+ ++ + E + K +AD F ++P K+ Q+ + ++ TK+ Sbjct: 23 GGKESGSKEVTIEFMHSSVEKERLDVINKLIAD-FEKENPTIKIK-QIPVEEDAFNTKVV 80 Query: 97 TLVASGQMPDFIDSDADPFAQELVNGGLLVDME--KFLKDEGLYDKFYEPALKYQELPDG 154 TL SG++P ++ D FA+ +++ L+D + K + D DK+YE A DG Sbjct: 81 TLARSGKLPAVMEVSQD-FAK-VMDKDQLIDQDAVKAVIDSVGEDKYYEGATNLVRSEDG 138 Query: 155 SLYLL-PMEYHMEMTWYNKKIFADNNLTVPKTLDDLLAVSKALKDKGITPIAVDGVDVWP 213 Y+ P+ ++ WYNKK AD PK D+ V+K +K + Sbjct: 139 KSYIAAPLSGWVQGIWYNKKALADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAES 198 Query: 214 VLRYAAMYPFRTTGNQFIRDLSQGKAKMSDAAGMQAANFASQIGKYFQDGFATTDYTTAK 273 + A F + + D ++G + +A + + Y G + D T K Sbjct: 199 TMSEQAFSQFALSNKANVLD-AKGNVTIDTPEMKEALQYYKDLSAYTMPG--SNDVTEIK 255 Query: 274 NLFLNGQAAMYNMGTWEIPSFVEESLPEGL 303 + F+NG M T+ +PS EE P + Sbjct: 256 DAFMNGTVPMAMYSTYILPSVYEEGDPSNI 285 >SP1690 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 445 Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 58 GAIVQTVKELADRFAADHPGFKLDLQVTADRPSYLTKLRTLVASGQMPDFIDSDADPF-A 116 G ++++++ AD F HP K+ ++ T + TK T +A+G +PD S A P Sbjct: 52 GPRLESIQKSADAFMQKHPKTKIKIE-TFSWNDFYTKWTTGLANGNVPDI--STALPNQV 108 Query: 117 QELVNGGLLVDMEKFLKDEGLYDKFYEPALKYQELPDGSLYLLPMEYHMEMTWYNKKIFA 176 E+VN LV + +K G DKF E AL ++ D Y +P+ H ++ W + Sbjct: 109 MEMVNSDALVPLNDSIKRIG-QDKFNETALNEAKIGD-DYYSVPLYSHAQVMWVRTDLLK 166 Query: 177 DNNLTVPKTLDDLLAVSKALKDKGITPIAVD-GVDVWPVLRYAAMYPFRTTGNQFIRDL 234 ++N+ VPKT D L SK LK+ G+ ++V G + R+ Y G+ +DL Sbjct: 167 EHNIEVPKTWDQLYEASKKLKEAGVYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDL 225 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,268,817 Number of extensions: 1317257 Number of successful extensions: 4090 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 4094 Number of HSP's successfully gapped: 27 Length of query: 444 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 334 Effective length of database: 25,691,691 Effective search space: 8581024794 Effective search space used: 8581024794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)