BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0003.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 156 3e-38 BMEII0752 [G] COG0395 ABC-type sugar transport system, permease ... 143 4e-34 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 136 3e-32 Cgl1351 [G] COG0395 ABC-type sugar transport system, permease co... 124 2e-28 Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 122 4e-28 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 144/252 (57%), Gaps = 2/252 (0%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 P++W+++S+FK+S ++ +++PSSW EN+ S + + + Y N+ IVT + + + Sbjct: 51 PLLWMVMSAFKNSDDIFEHSWSLPSSWHPENFVSAWNQG-ISSYFMNSVIVTALTCVITV 109 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 F+SA A + L + + L+ G+M+ QV+L+PL+ + + GL N+Y ALILP Sbjct: 110 FISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPY 169 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 + +P +I++ S++ + EL EAA +DGC + VF RI P+++ +T + Sbjct: 170 AAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTAYH 229 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 WN+F+F+ F +D+ +TI GL +F A TDWG A + +L + KY Sbjct: 230 TWNEFMFAIIFIDDENLRTIPAGLMQFRDAL-QTDWGVLLAGLTISAAPIIILFLLMQKY 288 Query: 266 VMAGVSDGAVKG 277 + G++ G+VKG Sbjct: 289 FVRGIASGSVKG 300 >BMEII0752 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 132/253 (52%), Gaps = 3/253 (1%) Query: 26 PVVWLMLSSFKSSIELTTQP--FAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLAL 83 PV +++SFKS + +P F P S+S Y +V ++ S L Y +N+AIVT V + L Sbjct: 28 PVALTLINSFKSRNAIFREPLRFPTPESFSLIGYETVLKQGSFLTYFQNSAIVTVVSIFL 87 Query: 84 IIFLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALIL 143 +I A A FAL + R N L+ +GIMIPI++ + L GL+N+ ALIL Sbjct: 88 VILFGAMAAFALAEYRFRGNMLTGLYLAIGIMIPIRLGTVALLQGMVAAGLVNTLTALIL 147 Query: 144 PQVGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINF 203 LPL+I I + F R V +L A IDG + Y +F +++ PL TVA Sbjct: 148 VYTAQGLPLAIFILSEFMRTVSDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATVAVFTM 207 Query: 204 IFIWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLN 263 I IWND F +A KT+ +G Q FIG F T+W AA + Y+ + Sbjct: 208 IPIWNDLWFPLILAPSEATKTVTLGAQLFIGQF-VTNWNAVLAALSLAMFPILILYVLFS 266 Query: 264 KYVMAGVSDGAVK 276 + ++ G++ GAVK Sbjct: 267 RQLIRGITAGAVK 279 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 135/255 (52%), Gaps = 4/255 (1%) Query: 26 PVVWLMLSSFKSSIELTTQPFAM-PSSWSFENYA---SVFRESSLLLYIKNTAIVTFVCL 81 P++W++ SS K + E+ +Q ++ PS + + NY + F + +Y KN+ I+T + Sbjct: 27 PILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITTSVV 86 Query: 82 ALIIFLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPAL 141 I S+ + ++ + L +M+P+Q+TLIP +I++ + G +N++ L Sbjct: 87 IGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTFYPL 146 Query: 142 ILPQVGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASI 201 I+P P I + F R +P EL EAA+IDGC+ + VF R+I PL +TVA Sbjct: 147 IVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVTVAIF 206 Query: 202 NFIFIWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLF 261 F++ W+DF+ + N +T+A+GL+ F+ A T WG A + +LF Sbjct: 207 AFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFIIFLF 266 Query: 262 LNKYVMAGVSDGAVK 276 +Y++ G+S +K Sbjct: 267 FQRYLVEGISTTGLK 281 >Cgl1351 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 7/255 (2%) Query: 26 PVVWLMLSSFKSSIELTTQPFA-MPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALI 84 P+V+++L+SFK E+ TQP PS ++F+NYA+VF L Y +N+ I+T + + Sbjct: 28 PLVFIVLTSFKQQSEIYTQPVTWFPSEFNFDNYANVFERVPFLNYFRNSIIITVILCLVK 87 Query: 85 IFLSATAGFALVKMINRLNSKLLLFFTV--GIMIPIQVTLIPLFIMYKDYGLLNSYPALI 142 I L + +AL I R + L+F V +M+P +VT+I + + G ++Y +I Sbjct: 88 IILGVISAYALS--ILRFPGRNLVFLLVISALMVPSEVTVISNYALVSQLGWRDTYQGII 145 Query: 143 LPQVGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASIN 202 +P G A + + + +P ELIEAA +D C +++ +++ P+++ T + + I Sbjct: 146 VPLAGIAF--GTFLMRNHFMSIPSELIEAARMDHCGHFRLLWKVLLPISMPTLVAFSMIT 203 Query: 203 FIFIWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFL 262 + WN +++ T+ +GL G ++WG AA V +L L Sbjct: 204 VVNEWNQYLWPFLMAETDNSATLPIGLTMLQNNEGVSNWGPVMAATIMTMLPVLVMFLAL 263 Query: 263 NKYVMAGVSDGAVKG 277 +Y++ G+ GAVKG Sbjct: 264 QQYMIKGLISGAVKG 278 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 136/256 (53%), Gaps = 5/256 (1%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMP--SSW-SFENYASVFRESSLLLYIKNTAIVTFVCLA 82 P++++ ++SFKS +++ PF++P +W FEN+ + L + I+T + + Sbjct: 50 PILFIFINSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLEATLWSFIITILSVI 109 Query: 83 LIIFLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALI 142 +I+F SA + + ++ + L F V ++IP Q+ + P + D LN+ ++ Sbjct: 110 VIVFFSAMTAYYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPT-VKIADMLHLNNPIGIV 168 Query: 143 LPQVGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASIN 202 + +GF LS+ +F F + +P ++ EAA+IDGC Q + R++ P+ T ITVA +N Sbjct: 169 VLYLGFGSGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVWPMLKPTAITVAILN 228 Query: 203 FIFIWNDFVFSNTFTN-DKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLF 261 +++WND++ YKTI V +Q F+G+ G D G A + Y Sbjct: 229 AMWVWNDYLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAMLVLAIIPIVIFYFS 288 Query: 262 LNKYVMAGVSDGAVKG 277 ++++ GV+ GAVKG Sbjct: 289 TQRHIIEGVAAGAVKG 304 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,195,611 Number of extensions: 551364 Number of successful extensions: 2188 Number of sequences better than 1.0e-05: 161 Number of HSP's gapped: 2018 Number of HSP's successfully gapped: 161 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)