BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0001.p (330 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1200 [K] COG1609 Transcriptional regulators 123 4e-28 STM1218 [V] COG1136 ABC-type antimicrobial peptide transport sys... 122 7e-28 TM1218 [K] COG1609 Transcriptional regulators 122 7e-28 RSc1014 [K] COG1609 Transcriptional regulators 118 1e-26 STM3012 [K] COG1609 Transcriptional regulators 117 4e-26 >TM1200 [K] COG1609 Transcriptional regulators Length = 333 Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 160/317 (50%), Gaps = 21/317 (6%) Query: 1 MAKQRVTLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLI 60 M K+ VT+ +A+ AGVS TVS +N N + ETR KI +LGY N A SL Sbjct: 1 MKKKYVTIRDIAEKAGVSINTVSRALN-NKPDISEETRRKILKIAQELGYVKNATASSLR 59 Query: 61 TGKMYTIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILLDFDEIFMNIQ---- 116 + + +G+++++S Y E L K ++ + GY+++L++ + I+ N + Sbjct: 60 SKQTNIVGVIIADSANPFYAEVL------KGIEAASRKYGYQIMLMNTERIYENEEKAIE 113 Query: 117 -----MVDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVD 171 VDG+++ + + L++ VP + +GRH + ++ + G Sbjct: 114 VLLQRRVDGLLITPVQDRSDDIKTLIERKVPFVIVGRHFEELEVDEIHSDEVKGGYLATR 173 Query: 172 HLMSRGYHKIIILTYPHGQVPGFDDRLNGASQAMQEKG---NLTTVITGDMTESFGYDTV 228 HL+ RG II+++ + + RL G +A++E G + +I D+ GY + Sbjct: 174 HLIERGRKNIIMISGYLFKSAAYM-RLEGYRKALKEYGIPFSEKMIIETDIDIESGYRAM 232 Query: 229 MQLHSNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSELL-SLSTI 287 + G +A+FC ND+ A GV+KA K+ +PE++AV+G DD+ S + SL+T+ Sbjct: 233 REAIEKGLEFEAVFCYNDLLAFGVIKALKECGYRIPEDVAVVGYDDIVYSSFICPSLTTV 292 Query: 288 RHPINELALNASELIIQ 304 R E+ A +++Q Sbjct: 293 RIKKFEMGFEAFRMLLQ 309 >STM1218 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 0/338 (0%), Positives = 0/338 (0%), Gaps = 31/338 (9%) Query: 7 TLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLITGKMYT 66 + + ++ + K + + + + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSL-DNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR--L 59 Query: 67 IGLVLSNSTYDGYFEDLYFLHFAKVL----KQQLK---------TMGYKLILLDFDEIFM 113 ++ + + + L + Sbjct: 60 SKSAVAL--RLTA-------RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS 110 Query: 114 NIQMVDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVDHL 173 + + + ++ + ++ S ++ + Sbjct: 111 A-FGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG 169 Query: 174 MSRGYHKIIILTYPHGQVPGFDDRLNGASQAMQEKGNLTTVITGDMTESFGYDTVMQ-LH 232 + ++ + D + Sbjct: 170 NAPTIPPVLYGL-NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 Query: 233 SNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSELL-SLSTIRHPI 291 G + + + D + + Sbjct: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Query: 292 NELALNASELIIQSVETKGEPVQPVDRMFPIELMARHT 329 Sbjct: 289 -- 324 >TM1218 [K] COG1609 Transcriptional regulators Length = 328 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 170/338 (50%), Gaps = 31/338 (9%) Query: 7 TLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLITGKMYT 66 ++ VAK AGVS ATVS +NG ++ + ETR+K+ D+I KL Y K + + T Sbjct: 3 SIKDVAKLAGVSIATVSRVING-YNNVSEETRKKVIDAIRKLNYHPVYAVKGAVLKR--T 59 Query: 67 IGLVLSNSTYDGYFEDLYFLHFAKVL----KQQLK---------TMGYKLILLDFDEIFM 113 IG+++ N + G+ H+ ++L K+ +K T+ + L+ E+F Sbjct: 60 IGVLVPN--FGGF-------HYNEILTGIEKEAIKRDFTLMISTTLHRTSVELERLEVFF 110 Query: 114 NIQMVDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVDHL 173 + VDGIIV ++ + E+ + RL+ +PV+ + R V +++Y G+ +L Sbjct: 111 A-KRVDGIIVCSSKKDEEQLERLIKSAIPVVVVDREEPEIRLDNVGIDNYAAGRMCAKYL 169 Query: 174 MSRGYHKIIILTYPHGQVPGFDDRLNGASQAMQEKGNLTTVITGDMTESFGYDTVMQ-LH 232 + +G+ K+++L + F DR G G V GY V + L Sbjct: 170 LEKGHRKVLLLK-GRKDIYSFSDRERGFIDYSTRHGIDVKVTPCGYFAEHGYHAVERYLK 228 Query: 233 SNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSELL-SLSTIRHPI 291 +G+ A+F +ND+SA G LKA DL + VP+ ++V+G DD P S + L+T+R P Sbjct: 229 KHGRDFTAIFAINDLSAFGALKALHDLGVLVPDEVSVMGFDDDPISSYTIPPLTTVRQPR 288 Query: 292 NELALNASELIIQSVETKGEPVQPVDRMFPIELMARHT 329 E+ A E++ + + K + V + P+E++ R + Sbjct: 289 EEMGRVAFEILYERLSGKKGVARRV--VLPVEIVERES 324 >RSc1014 [K] COG1609 Transcriptional regulators Length = 347 Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 21/312 (6%) Query: 6 VTLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLITGKMY 65 T+ VA AGVS TVSH +N N + ETR+++ ++I Y + VA+SL Sbjct: 2 ATIKDVAALAGVSFTTVSHVIN-NTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTR 60 Query: 66 TIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILLDFDEI------FMNIQM-- 117 TIG+++ +T + YF A+ ++ GY +IL + D+ ++ + M Sbjct: 61 TIGVLVPTAT------NPYFAELARGIEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEK 114 Query: 118 -VDGIIVKATLETEKFMPRLMDLNVPVITIGRHNLSYGAHIVRVNDYQCGQTGVDHLMSR 176 VDG+IV + + L + +PV+ + R A V+++ + HL+ Sbjct: 115 RVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDHEEGAYLATRHLLEL 174 Query: 177 GYHKIIILTYPHGQVPGFDDRLNGASQAMQEKG---NLTTVITGDMTESFGYDTVMQLHS 233 G+ +I ++ P + RL G +A++E G + V GD T GY +L + Sbjct: 175 GHRRIACISGP-STLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLT 233 Query: 234 NGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSELL-SLSTIRHPIN 292 G+ P A+F ND+ IG L+A +L ++VP+ L+++G DD+ + +LST+ I Sbjct: 234 TGETPTAIFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIR 293 Query: 293 ELALNASELIIQ 304 +L + +++ Sbjct: 294 QLGETTASTLLE 305 >STM3012 [K] COG1609 Transcriptional regulators Length = 340 Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 26/326 (7%) Query: 6 VTLVQVAKDAGVSPATVSHFMNGNFHRMRPETREKISDSITKLGYQANPVAKSLITGKMY 65 T++ V++ AGVS ATVS +NG +++ TR+K+ ++ LGY+ N +A+SL Sbjct: 3 ATMLDVSRHAGVSKATVSRVLNGT-GQVKESTRQKVFTAMQALGYRPNLLARSLANRTSN 61 Query: 66 TIGLVLSNSTYDGYFEDLYFLHFAKVLKQQLKTMGYKLILLDFDEI---------FMNIQ 116 +IGLV+S T+DG+ YF + +Q ++ +LI+ D + + + Sbjct: 62 SIGLVVS--TFDGF----YFGSLLRRASRQAESHNKQLIVTDGHDTPEREQKAVQMLADR 115 Query: 117 MVDGIIVKATLETEKFMPRLMDLN-VPVITIGRHNLSYGAHIVRVNDYQCGQTGVDHLMS 175 D II+ E + L+D +P++ I R+ + V++L++ Sbjct: 116 QCDAIILYTRYMDELAILSLIDATEMPLVIINRNVTQARDRAIFFEQETAAFQAVEYLIT 175 Query: 176 RGYHKIIILTYPHGQVPGFDDRLNGASQAMQEKG---NLTTVITGDMTESFGYDTVMQLH 232 +G+ I +T P P R+ G +A+++ G V GD T + GYD +L Sbjct: 176 QGHRDIACITLPV-HTPTGTSRVAGYRKALEKYGIPWQPAKVKYGDYTLTRGYDACRELL 234 Query: 233 SNGQLPQALFCLNDISAIGVLKACKDLNLSVPENLAVLGVDDMPTVSEL-LSLSTIRHPI 291 G ALF ND +A+G KA + L +P+++++ G DD P + L LST+ PI Sbjct: 235 EEGVTFSALFACNDDTALGAAKALRQAGLRIPQDVSLFGFDDAPGATWLEPGLSTVYLPI 294 Query: 292 NELALNASELIIQSVE-TKGEPVQPV 316 + A I Q+V EPV P+ Sbjct: 295 EAMIATA---IDQAVRLANSEPVAPI 317 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,019,233 Number of extensions: 952493 Number of successful extensions: 2262 Number of sequences better than 1.0e-05: 161 Number of HSP's gapped: 1995 Number of HSP's successfully gapped: 163 Length of query: 330 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 223 Effective length of database: 26,037,693 Effective search space: 5806405539 Effective search space used: 5806405539 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)