BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0155.0007.p
         (161 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1904 [K] COG1522 Transcriptional regulators                          92   3e-19
BS_lrpC [K] COG1522 Transcriptional regulators                         91   6e-19
lrp [K] COG1522 Transcriptional regulators                             91   6e-19
Zlrp [K] COG1522 Transcriptional regulators                            91   6e-19
BS_lrpB [K] COG1522 Transcriptional regulators                         91   6e-19

>VC1904 [K] COG1522 Transcriptional regulators
          Length = 164

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 7   MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66
           +D ID  I+  +  +GRI+  E             +RVR+LE QG I GYTAL++ +   
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTALLNPQYLD 71

Query: 67  YGLGALIAVSLER--PVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRII 124
             L   + ++L R  P   + F   VQKL +IQECH  +GD DY+LK R        R++
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSDMGAYRRLL 131

Query: 125 SGELKSLPGIVRTRTTIILGTVKET 149
              L  LPG+  TRT +++  VK+T
Sbjct: 132 GDTLLRLPGVNDTRTYVVMEEVKQT 156


>BS_lrpC [K] COG1522 Transcriptional regulators
          Length = 144

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 0/145 (0%), Positives = 0/145 (0%), Gaps = 2/145 (1%)

Query: 7   MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66
            +      +       +I  +                +++   +   K     +      
Sbjct: 12  EELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEA 71

Query: 67  YGLGALIAVSLER--PVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRII 124
               A           +    F   +          +    +     +            
Sbjct: 72  TVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTH 131

Query: 125 SGELKSLPGIVRTRTTIILGTVKET 149
                                    
Sbjct: 132                           156


>lrp [K] COG1522 Transcriptional regulators
          Length = 164

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 7   MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66
           +D ID  I+  +  +GRI+  E             +RVR+LE QG I+GYTAL++     
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 67  YGLGALIAVSLER--PVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRII 124
             L   + ++L R  P   + F   VQKL EIQECH  +GD DY+LK R        +++
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 125 SGELKSLPGIVRTRTTIILGTVKET 149
              L  LPG+  TRT +++  VK++
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQS 156


>Zlrp [K] COG1522 Transcriptional regulators
          Length = 164

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 7   MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66
           +D ID  I+  +  +GRI+  E             +RVR+LE QG I+GYTAL++     
Sbjct: 12  LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71

Query: 67  YGLGALIAVSLER--PVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRII 124
             L   + ++L R  P   + F   VQKL EIQECH  +GD DY+LK R        +++
Sbjct: 72  ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131

Query: 125 SGELKSLPGIVRTRTTIILGTVKET 149
              L  LPG+  TRT +++  VK++
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQS 156


>BS_lrpB [K] COG1522 Transcriptional regulators
          Length = 149

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 0/145 (0%), Positives = 0/145 (0%), Gaps = 2/145 (1%)

Query: 7   MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66
                   I+      +I                   ++                A    
Sbjct: 12  QLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMGFSFTAFVFF 71

Query: 67  YGLGALIAVSLER--PVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRII 124
           +    +    L+     +  +    V               +     +         ++ 
Sbjct: 72  FMNAYMHDDLLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLNDLLKYGNYQLY 131

Query: 125 SGELKSLPGIVRTRTTIILGTVKET 149
                                    
Sbjct: 132                           156


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,043,556
Number of extensions: 355070
Number of successful extensions: 1183
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 118
Length of query: 161
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 63
Effective length of database: 27,075,699
Effective search space: 1705769037
Effective search space used: 1705769037
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)