BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0154.0002.p
         (170 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF0678 [L] COG3415 Transposase and inactivated derivatives             64   8e-11
AF2140 [L] COG3415 Transposase and inactivated derivatives             58   7e-09
AF1351 [L] COG3415 Transposase and inactivated derivatives             58   7e-09
SSO1362 [L] COG3415 Transposase and inactivated derivatives            53   2e-07
SSO1238_1 [L] COG3415 Transposase and inactivated derivatives          53   2e-07

>AF0678 [L] COG3415 Transposase and inactivated derivatives
          Length = 160

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 17/107 (15%)

Query: 44  TIDRSAKTVK-----GYIGA--YETGGLSGLQMNHSPGAPVRLTKEQQEKLKQTIVGSVP 96
           T+ ++AK V      GY+    +   GL GL+ N+  G P  L+ EQ+E+LK  +     
Sbjct: 46  TVPQAAKEVGVSKVIGYVWLERWNKQGLEGLKPNYGGGRPSELSDEQKEELKSIL----- 100

Query: 97  HDVGFTARHNWTLEIIAALIKREFGVTYSLRGISKMMQRQGLSYTKP 143
                  R NWT + +  LIK  FGV YSLR +S++++  G+ Y KP
Sbjct: 101 -----KERDNWTTKEVRELIKENFGVEYSLRHVSRLLKSFGMKYAKP 142


>AF2140 [L] COG3415 Transposase and inactivated derivatives
          Length = 161

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 26  YQTLYLYLQGTEIEEIAHTIDRSAKTVKGYIGAYETGGLSGLQMNHSPGAPVRLTKEQQE 85
           Y   YLY +G  +EE A  +  +  T   ++  + T G  GL      G P +LTK+Q+E
Sbjct: 36  YFIRYLY-RGMSVEEAAELVGITKATGYTWLKRWNTRGYEGLIPEFGGGRPSKLTKDQKE 94

Query: 86  KLKQTIVGSVPHDVGFTARHNWTLEIIAALIKREFGVTYSLRGISKMMQRQGLSYTKP 143
           +LK+ +            R +WT + +  LI+ +FGV+YS   + ++++  G+ Y KP
Sbjct: 95  ELKEML----------KERDSWTTKEVQELIEAKFGVSYSSWQVRRILKSFGMKYAKP 142


>AF1351 [L] COG3415 Transposase and inactivated derivatives
          Length = 161

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 26  YQTLYLYLQGTEIEEIAHTIDRSAKTVKGYIGAYETGGLSGLQMNHSPGAPVRLTKEQQE 85
           Y   YLY +G  +EE A  +  +  T   ++  + T G  GL      G P +LTK+Q+E
Sbjct: 36  YFIRYLY-RGMSVEEAAELVGITKATGYTWLKRWNTRGYEGLIPEFGGGRPSKLTKDQKE 94

Query: 86  KLKQTIVGSVPHDVGFTARHNWTLEIIAALIKREFGVTYSLRGISKMMQRQGLSYTKP 143
           +LK+ +            R +WT + +  LI+ +FGV+YS   + ++++  G+ Y KP
Sbjct: 95  ELKEML----------KERDSWTTKEVQELIEAKFGVSYSSWQVRRILKSFGMKYAKP 142


>SSO1362 [L] COG3415 Transposase and inactivated derivatives
          Length = 147

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 7   FQEIQTAMKQAKKRRMYERYQTLYLYL-QGTEIEEIAHTIDRSAKTVKGYIGAYETGGLS 65
            Q++  A K+ K  R+ ER   + L++  G   +E++  +++   T+K +IG Y+  GL 
Sbjct: 1   MQDLVQAYKEEKNARIKERILAVKLHVVDGKSEKEVSKMLNKGYSTIKLWIGKYKKEGLD 60

Query: 66  GLQMNHSPGAPVRLTKEQQEKLKQTIVGSVPHDVGFTARHNWTLEIIAALIKREFGVTYS 125
           GL+     G P ++   ++EK+KQ I+   P   G    + WT++ +   + +E G+ Y 
Sbjct: 61  GLKDKPRSGRPRKV---EEEKIKQ-ILEDKPQKYGIQQEY-WTMKTLKIAL-QEQGIEYK 114

Query: 126 LRGISKMMQRQGLSYTKPTYTLAAADEEKQRFF 158
              + +++   G +  KP  T   A+++K   F
Sbjct: 115 KSRLYELVHELGYNLVKPRPTNIQAEKDKWEDF 147


>SSO1238_1 [L] COG3415 Transposase and inactivated derivatives
          Length = 159

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 7   FQEIQTAMKQAKKRRMYERYQTLYLYL-QGTEIEEIAHTIDRSAKTVKGYIGAYETGGLS 65
            Q++  A K+ K  R+ ER   + L++  G   +E++  +++   T+K +IG Y+  GL 
Sbjct: 1   MQDLVQAYKEEKNARIKERILAVKLHVVDGKSEKEVSKMLNKGYSTIKLWIGKYKKEGLD 60

Query: 66  GLQMNHSPGAPVRLTKEQQEKLKQTIVGSVPHDVGFTARHNWTLEIIAALIKREFGVTYS 125
           GL+     G P ++   ++EK+KQ I+   P   G    + WT++ +   + +E G+ Y 
Sbjct: 61  GLKDKPRSGRPRKV---EEEKIKQ-ILEDKPQKYGIQQEY-WTMKTLKIAL-QEQGIEYK 114

Query: 126 LRGISKMMQRQGLSYTKPTYTLAAADEEKQRFF 158
              + +++   G +  KP  T   A+++K   F
Sbjct: 115 KSRLYELVHELGYNLVKPRPTNIQAEKDKWEDF 147


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,356,063
Number of extensions: 454382
Number of successful extensions: 930
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 9
Length of query: 170
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 71
Effective length of database: 26,960,365
Effective search space: 1914185915
Effective search space used: 1914185915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)