BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0047.p (190 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2213 [TK] COG2197 Response regulator containing a CheY-like re... 132 4e-31 BS_yhcZ [TK] COG2197 Response regulator containing a CheY-like r... 132 4e-31 slr0312 [TK] COG2197 Response regulator containing a CheY-like r... 124 7e-29 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 110 9e-25 PM1810 [TK] COG2197 Response regulator containing a CheY-like re... 108 7e-24 >BH2213 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 217 Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 6/186 (3%) Query: 7 FAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTSSASRE 66 GEA +G+ AL ++E+ QPD+VL+D+ + +G++ K + + ++L+SSA RE Sbjct: 30 IVGEAEDGEAALTLVEKVQPDIVLMDVIMPGINGIEATKKIKQKWPTVHVVVLSSSAERE 89 Query: 67 DFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKM-RMSGNSPTDE--- 122 + A + +GY LKE PE L I+ V G P + + + RM+G+ +E Sbjct: 90 SVIPALQAGANGYQLKEVDPEMLAETIRAVCSGESRLHPKVTKHVLTRMNGDESEEEKRL 149 Query: 123 --LTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALYANAV 180 LT +EK+VL EL +G SN+EIAS L ISE TVK HVS I KL V DRTQAAL+A Sbjct: 150 RDLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKY 209 Query: 181 GLTKYE 186 G+++Y+ Sbjct: 210 GISEYD 215 >BS_yhcZ [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 214 Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 7/182 (3%) Query: 2 QSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTS 61 Q ++ GEA G EAL +IEET+PDLVL+DL + + G+ IK A + + I+LTS Sbjct: 23 QDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVLTS 82 Query: 62 SASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNSPTD 121 + +E + A + Y LK+ PEEL+ Q VH G +M + N Sbjct: 83 YSDQEHVIPALQAGAKAYQLKDTEPEELVKTRQ-VHGGEYKLSTAIMPHVLTHMKNQHDP 141 Query: 122 E------LTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAAL 175 E LT +EK+VL E+ G SN+EIA+ LFISE TVK HVS +LAKL+VADRTQAAL Sbjct: 142 EKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAAL 201 Query: 176 YA 177 +A Sbjct: 202 FA 203 >slr0312 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 209 Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 3/180 (1%) Query: 4 NLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTSSA 63 ++ +A NG++A+ + EE QPD+ L+DL++ + G+ I A + ++ I+LT+ Sbjct: 31 DMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAIVKFARIIVLTTYD 90 Query: 64 SREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNSPTDEL 123 S ED + + GY+LKE P+ELL AI+ VH+G+KY P + ++ N EL Sbjct: 91 SDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRGQKYIPPDVGAKLVQRLSNP---EL 147 Query: 124 TPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALYANAVGLT 183 + +E EVL L QG SN +IA+ L I E TVK HV++IL KL V DRTQA + A G+ Sbjct: 148 SERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIV 207 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 219 Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 9/187 (4%) Query: 1 MQSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLT 60 ++ ++ GEA NG+ A+ +I + PD+VL+D+++ G+ + + K ++LT Sbjct: 23 LEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMDGVAATQEIQQNFPNVKVLVLT 82 Query: 61 SSASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNSPT 120 + E A + GY+LK+ EEL AI+ V KG PG+++ + ++P Sbjct: 83 TFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVEKGYTQLGPGIVKKLLVQFQSTPN 142 Query: 121 D---------ELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRT 171 +LTP+EKEVL + GA+NREIA +L+ISE TVK HV+ IL +L + DRT Sbjct: 143 HTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQLYISEGTVKNHVTNILNRLNLRDRT 202 Query: 172 QAALYAN 178 QAA+ AN Sbjct: 203 QAAIIAN 209 >PM1810 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 209 Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 1/173 (0%) Query: 4 NLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTSSA 63 N +A NG E + + +TQPDL+++DL + SGLD +KA R+ G+ ++ ++LT S Sbjct: 29 NFEVVADAGNGSEGISLALQTQPDLIILDLNMKGLSGLDTLKALRAEGIDARILILTVSD 88 Query: 64 SREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNS-PTDE 122 + D + DGY+LK+ P+ LL IQ + +G + + + N+ P Sbjct: 89 LKSDIFTLIDAGADGYLLKDTEPDALLSQIQRIAQGEVILSDSIKDALIERQMNADPIYS 148 Query: 123 LTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAAL 175 LT +E +VL + G SN++IA +LFISE TVK H+ +L KL V R A + Sbjct: 149 LTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,690,677 Number of extensions: 454255 Number of successful extensions: 1992 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 1935 Number of HSP's successfully gapped: 187 Length of query: 190 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 90 Effective length of database: 26,845,031 Effective search space: 2416052790 Effective search space used: 2416052790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 113 (48.1 bits)